Rhodopirellula baltica: RB9360
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Entry
RB9360 CDS
T00134
Symbol
rtcB
Name
(GenBank) conserved hypothetical protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
rba
Rhodopirellula baltica
Brite
KEGG Orthology (KO) [BR:
rba00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
rba03016
]
RB9360 (rtcB)
Enzymes [BR:
rba01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
RB9360 (rtcB)
Transfer RNA biogenesis [BR:
rba03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
RB9360 (rtcB)
Prokaryotic type
tRNA splicing ligases
RB9360 (rtcB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
CAD76220
UniProt:
Q7ULP9
LinkDB
All DBs
Position
complement(5014031..5015563)
Genome browser
AA seq
510 aa
AA seq
DB search
MTTSTKTRPNTDSRNLYSGPGMVATGEATALLRTETTPPIRVFGTESIRETFDDLCLQQA
VNSRLAPGVTDLVLNPDAHCGYGAPVGCVMVSPTHIYPGPVGVDIKCSMSLLQLDLPAEA
IEDRKVRRALISAICQRTPTGAGKGQRSVTKARHVNRTLGKQLVTEGASDDVCHALGIPT
SWSHRCEDSYHVGHDDTQLALENRLDTILSHRHMSNFSDKMQQLGSYGGGNHFGECEVVE
VGDNDRAREVAQTFGLRDGNVAFLSHCGSRGFGHNLASGQFRTLQDKFDRWGIPLPAGDR
QLVYAPLGTDEANDYLDDMALGANFATVNHLLINALVLEAFQEVIPGTRGNLVYFISHNI
ARKEIVDNQPAWVHRKGATRAMPGGHHSLANTPFAKSGHPILLPGNPRDGSAVMVADEGA
SASCYSVNHGAGRTLGRRHAKRVLDQATVDSEFDSNDILSNCRKYPIDEAPAAYKDFNEV
LRSVKSAGLASEVARLKARFVIKDASKADD
NT seq
1533 nt
NT seq
+upstream
nt +downstream
nt
atgacgacttcgaccaagacccgtccgaacacggactcgcggaacctgtactccggtcct
ggaatggttgcgaccggcgaagcgaccgcgttgcttcggacggaaacgactccacccatt
cgcgtcttcggaaccgagtcgattcgcgaaacctttgacgacttgtgtttgcagcaagcg
gtcaactcacggttggctcccggtgtgactgatttggttttgaatccagacgcgcactgt
ggttatggagcaccggtcggttgcgtgatggtttcgcccacacacatctatcccggtccg
gttggtgtcgacatcaagtgttcgatgagtttgctgcaattggatcttcccgccgaagcg
atcgaggaccgcaaggttcgtcgagcgttgatctcggcgatctgccaacgcacaccgacg
ggtgcgggcaagggacaacgcagcgtgaccaaagcacggcacgtcaaccgaacactcgga
aagcaattggtgaccgaaggtgcgagtgacgatgtgtgtcacgctcttgggattccaacc
agttggtcacaccgatgtgaagactcgtaccatgttggacatgatgacacgcagttggcg
ctggagaatcgcctcgacacgatcctaagccatcgtcacatgagtaacttcagtgacaag
atgcagcaattgggttcgtatggaggcgggaaccacttcggggaatgtgaagtggtggaa
gttggcgacaacgaccgtgctcgcgaagtggctcaaacgtttgggttgcgtgatggcaac
gtggcgttcttgtcgcattgtggatcgcgagggttcgggcacaacttggcgtcggggcaa
ttccgtaccttgcaggacaagtttgaccggtgggggattccgcttcctgcgggcgatcgc
caattggtctacgctcctttgggaacagatgaagcgaatgactacctcgatgacatggca
ttgggagcgaacttcgcgaccgtgaaccatttgctgatcaatgccctcgtattggaagcg
ttccaggaagtgattccgggaacacgcgggaacctggtttacttcatcagtcacaacatt
gctcgaaaggaaatcgtggacaatcaaccggcatgggtgcatcgaaagggagccacgcga
gcgatgccaggtgggcatcactcgcttgccaacactccgtttgcaaaatccggacacccg
attttgttgccgggaaatccacgcgatgggtcagccgtgatggtggccgatgaaggtgcg
tcggcatcttgttacagcgtcaatcatggtgcgggacggacgctcggacgtcgtcacgcc
aaacgtgtgttggatcaagcgacggtggattcggaattcgattccaacgatatcttgagc
aattgtcgcaagtacccgatcgacgaagcgcctgcggcatacaaagacttcaatgaagtc
ctgcggtcggtgaagtcggctggattggcaagcgaggtggctcgtttgaaagcacggttc
gtgatcaaggatgcgagcaaagcggatgattga
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