Rouxiella badensis subsp. acadiensis: H2866_11440
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Entry
H2866_11440 CDS
T06835
Symbol
hrpB
Name
(GenBank) ATP-dependent helicase HrpB
KO
K03579
ATP-dependent RNA helicase HrpB [EC:
5.6.2.6
]
Organism
rbad
Rouxiella badensis subsp. acadiensis
Brite
KEGG Orthology (KO) [BR:
rbad00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rbad03019
]
H2866_11440 (hrpB)
Enzymes [BR:
rbad01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
H2866_11440 (hrpB)
Messenger RNA biogenesis [BR:
rbad03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
H2866_11440 (hrpB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HrpB_C
CON_HrpB
Helicase_C
DEAD
HA2_N
ResIII
Motif
Other DBs
NCBI-ProteinID:
QOI53622
LinkDB
All DBs
Position
2486589..2489027
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AA seq
812 aa
AA seq
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MSLLPVGAVLNQVIAALQQAQQVLLHAPTGAGKSTWLPLQILKSGLFPGKILLLEPRRLA
AKSVAYRLAQQLGEQAGQTVGYRMRAESKTSAETRLEVVTEGILTRMVQQDPELADYSLV
VLDEFHERSLQADLALALLLDVQQGLREDLRLLIMSATLDNARLSPLLPDAPVIISEGRS
FPVERHYLPLASHERLDEGVARIVSRLMAENSGSMLLFLPGVAEITRTQNLLTGRLSDDV
DLCPLYGALSLEQQQKAIQPASTGRRKVVLATNIAETSLTIEGIRLVVDSGLERSAQFDA
RSGLTRLVTQRISQAAMTQRAGRAGRLEPGLCWHLFSKEQAERAAAQSEAEILQSDLSGL
WLELLQWGCQDASQLTWLDAPPAIALKVAQRLLSSLGAIDDEGKLTPVGRSMAQIGCEPR
LAAMLVQAERQGADALATAALLAAIIEEPPRGGQPDIDYWLSRPQPHWQRRARQLSQRLS
RSGGQVDASLAPWLLASAFSDRIAERRGLDGRYQLANGLGASLAQDDALTRAPWLVAPQL
LQGNNSPDARILLAITLDASQLAARLPKIVKEQTAVEWDEEKGTLRAWRRWQVGRLVLKA
QPQAKPADEDLQQALLEWVRAQGLQGLTWSTAAEQLRIRLMCAAKWLPEISWPAMDDASL
LDNLEQWMLPSLNGVRSLRALQQIDLAEALLRLMSWDQRQRLDANLPTHYSVPTGSRLAI
RYHSDQPPALSVRLQEMFGEQRSPMLAEGRVAVVLELLSPAHRPLQITRDLAAFWQGSYR
EVQKEMKGRYPKHPWPDNPAEALPTRRTKKYS
NT seq
2439 nt
NT seq
+upstream
nt +downstream
nt
gtgtctttactgcccgtcggtgccgttttgaaccaagttattgccgcgctgcaacaggcg
cagcaggtgttattgcatgcgcccaccggagccggtaagtcgacctggttaccgttgcag
attcttaagtccggcctgtttccaggaaaaatcttgctgcttgagcctcgcagactggcg
gcaaagagcgtggcctatcgtctggcgcagcagcttggtgaacaagcggggcagactgtc
ggctaccgcatgcgcgccgaatcaaagaccagcgcggagacgcgcctcgaggtggtcacc
gagggaattttaacccgcatggtgcagcaggaccccgagcttgccgactactcgctggtt
gttctcgatgaattccatgaacgcagtttgcaggccgaccttgcgctggcgctgctgctc
gacgtgcagcaggggctgcgtgaagatttgcggttgctgattatgtcggcgacgctcgac
aacgcccgcctgtcgccgctgctgcctgacgcgccggtcattatctctgaaggccgcagt
tttccggtcgagcgccattatctgccgctcgccagtcatgagcgtctcgacgaaggcgtt
gcgcgtatcgtcagccgtctcatggccgagaatagtggctcgatgctgctatttttaccc
ggcgtggcggaaatcactcgtacgcaaaatctcctgaccggacggctgagcgacgacgtc
gatctctgcccgctttacggtgcgctttcgctggaacagcagcagaaagcgattcaacct
gcgtcgaccggtcgtcgcaaggtggtgctggcgaccaacattgccgagaccagcctgact
attgaaggcattcggctggtggtcgacagcggtctggagcgcagcgcgcagtttgacgcc
cgcagcgggctgacgcggcttgtcacgcaacgcatcagtcaggcggcgatgactcagcgt
gcagggcgcgctgggcgtctcgagccgggactgtgctggcacctgttcagtaaagagcag
gccgagcgtgccgctgcgcaaagcgaagcggaaattctacaaagtgatttaagcggtctg
tggctggagctgttgcagtggggatgtcaggatgcttcgcagctgacgtggctcgacgcg
ccaccggctatcgcgctcaaggtcgcgcagcggctgctgagctcgctgggcgcgatagac
gacgagggcaaacttaccccggtcgggcgttctatggcacagattggctgcgaaccgcgt
cttgcggcgatgctggtgcaggccgagcgccagggggctgacgcgctcgccaccgcggcg
ctgctggccgccattattgaagaacctccgcgtggggggcagccggatatcgactactgg
cttagccgaccgcagccgcactggcagcgtcgtgcccgtcagctcagtcagcgactttcg
cgcagcggcggacaggttgatgcctcgcttgccccctggctgctggcctcggcgttcagt
gaccgtatcgccgagcgacgcgggctcgatggccgttatcaactcgcgaacggtttgggc
gcctcactggcgcaggacgatgcattaacccgcgctccctggttggtcgcgccgcagctg
ttgcagggcaataacagccctgatgcacgcattctgctggccatcacgctggacgcttct
cagcttgccgcgcggctacccaagattgttaaagagcagaccgccgtcgaatgggacgaa
gaaaaagggaccctgcgcgcgtggcgacgctggcaggttgggcgtctggtgttgaaggcg
cagccgcaggctaaaccggcggacgaagacctacagcaggcgctgcttgagtgggtgaga
gcgcaggggcttcaggggctgacctggtcaacggcggccgaacagctgaggattcgcctg
atgtgcgccgcgaaatggctgccggaaatcagctggccagcgatggatgacgcaagcctg
ctcgataacctcgagcagtggatgctcccgtcgctcaacggcgttcgcagcctgcgtgcg
ttacagcagattgatttggcagaggcattgctgcgcctgatgagttgggatcaacgtcag
cgtcttgacgctaatttacccacccattacagcgtcccgactggcagtcggctggcaatc
cgctatcatagcgaccagccaccggcgctgtcggtgcgtttacaggagatgtttggagag
caacgcagcccgatgctggccgaaggccgcgtcgccgtggtgctagaactgctttcccca
gcacatcggcctttgcaaataacccgtgatttggccgccttctggcagggctcctatcgc
gaggttcaaaaagagatgaagggccgataccctaaacacccgtggccggataatcccgcc
gaggcgttacccacgcgtagaaccaagaaatacagctga
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