Rouxiella badensis subsp. acadiensis: H2866_15245
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Entry
H2866_15245 CDS
T06835
Symbol
rne
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
rbad
Rouxiella badensis subsp. acadiensis
Pathway
rbad03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rbad00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
H2866_15245 (rne)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rbad03019
]
H2866_15245 (rne)
03009 Ribosome biogenesis [BR:
rbad03009
]
H2866_15245 (rne)
Enzymes [BR:
rbad01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
H2866_15245 (rne)
Messenger RNA biogenesis [BR:
rbad03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
H2866_15245 (rne)
Ribosome biogenesis [BR:
rbad03009
]
Prokaryotic type
rRNA processing factors
H2866_15245 (rne)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
PNPase_C
S1
FtsA_C
Wound_ind
Motif
Other DBs
NCBI-ProteinID:
QOI54303
LinkDB
All DBs
Position
complement(3315465..3319007)
Genome browser
AA seq
1180 aa
AA seq
DB search
MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY
GAERHGFLPLKEIAREYFPSNYSSHGRPNIKDVLREGQEVIVQVDKEERGNKGAALTTFI
SLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEALSSLQLPDGMGLIVRTAGVGKSAEAL
QWDLSFRLKHWDAIKKAAEGRPAPFLIHQESNVIVRAFRDYLRPDIGEILIDNPKVLELA
KEHIAALGRPDFSSKIKPYVGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDTTEALT
AIDINSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDYIDMTPVRHQREVE
NRLRDAVRQDRARIQIGRISRFGLLEMSRQRLSPSLGESTHHVCPRCSGTGTIRDNESLS
LSILRLIEEEALKENTKEVHAIVPVPIASYLLNEKRESVNAIEKRQGGVRAVIVPNDQMH
TPHYHVMRVRKGEESSTLSYLLPQLHEAEMLQPSEDPPSERKRPEQPALATFALPVEAPP
AYEQPVAAPQPVQTRTTAVNTAPVAAAPAAKTGFMGKLLGGLKNLFGSTPEPEAKPAVVE
EVKAQPEATETENRRNNDRRNQRRQGTRRNGERGERNERSGERGERNGERNNRNERSDRN
ERSDRTEGRTDRTERNDRNESRSEPREENRRNRRNQEPVAVEAVAQDVENVVNREEQQQP
RRERGDRSRRRNEDKRKNQPEDKAAENIVVEEVAAAPAPVAAVEDQDERMPSQRRQRRQL
TQKIRFESEVDQDVEDAAQMLITGVKPAERPAEPKAAEPALNDAANDVDSEDAQGDNTRE
NGMPRRSRRSPRHLRVSGQRRRRYRDERYPTQSPMPLAGAFVSPEMASGKVWISYPVVQA
VDAVQNVEQEAAAADVAVQAAVLTEQVVIAQENTPAPAQVTPVAEVKPTPVESAPAVETH
VPTSTLTFAEAQEVIEQEVEATKAFVAAEPHVVEPTTLEATDAEVPAPTPTEPVVVEPAA
VEAAAEEPAVVEPARSEPVATAEAEVVKPAAVEPVAEPVVESAKVEEAPVEAVKPQVEDA
VKLEVAGIEATEAQAPAIEIPAAPASVAPVPASTADDQPRFKHHASAPMTKAPAAAYVAE
PARFSDWVRPAYDFEGKGSAGGHAAASTSTAPATKPEMPQ
NT seq
3543 nt
NT seq
+upstream
nt +downstream
nt
atgaaaagaatgttgattaacgcaactcagcaagaagagttgcgcgttgctcttgtagat
ggacagcggctttacgatctggatattgaaagtcctggacacgagcagaaaaaagccaat
atttacaaaggtaaaatcacccgcatagagccaagccttgaagcagcgtttgttgattat
ggtgcggaaagacatggttttctccctctcaaagaaatcgcccgcgaatacttccccagc
aattattcctctcatggccgtccaaacatcaaagatgttctgcgcgaaggtcaggaagtt
attgttcaggtagataaagaagaacgtggtaacaaaggtgcagcgctgacgactttcatc
agcctggccggcagctatttagtgttaatgcctaataatccgcgcgctgggggtatttcc
cgccggattgaaggcgatgaccgtaccgaactgaaagaagccctctcttcactgcaactc
cctgacggcatgggcctcatcgtgcgtaccgccggtgtaggtaaatccgcagaggccctg
cagtgggacctgagcttccgcctgaaacactgggatgccatcaagaaagccgctgaaggc
cgccctgctccattcctgatccaccaggaaagcaacgtgattgtccgcgcattccgcgac
tatctgcgtcctgacatcggcgaaatcctgatcgacaacccaaaggttctcgaactggcg
aaagagcacattgcagcactgggtcgtcctgacttcagcagcaaaatcaagccatacgtg
ggcgaaattccgctgttcagtcattaccagattgaatcgcagattgaatctgccttccag
cgtgaagttcgtctgccttccggcggttcaatcgttatcgacaccaccgaagcactgacc
gctatcgacatcaactccgcacgtgcaacacgcgggggtgacatcgaagaaacggcgttc
aacaccaaccttgaagcagccgacgaaattgcccgtcagctgcgtctgcgtgacctcggt
ggcctgatcgttatcgactacatcgatatgaccccggttcgccaccagcgtgaagttgaa
aaccgcctgcgtgatgctgttcgccaagaccgtgcacgtatccagattggccgtatttct
cgtttcggtttgctggaaatgtcgcgtcagcgcctcagcccgtcactcggtgagtctacg
caccacgtttgcccacgctgtagcggtaccgggaccattcgtgacaacgagtcgctttca
ctgtctattcttcgtttgatcgaagaagaggcgctgaaagaaaacaccaaagaagttcac
gctatcgtgccagtgccgattgcctcttacctgcttaacgaaaaacgtgagtcggtgaat
gccatcgagaagcgtcaaggcggcgtgcgtgcggttatcgtgccaaacgaccagatgcat
accccgcactaccacgtaatgcgtgtgcgtaagggcgaagagtcttcaacgctgagctac
ctgttgcctcagctgcatgaagccgaaatgctgcaaccttccgaggacccaccttcagag
cgcaagcgtcctgagcaacctgctctggcgaccttcgctctgccggtagaagcacctcct
gcttacgagcagccagtggcagcaccgcagcctgtacaaactcgcaccacggcggttaac
acggctcctgtggcagcggctcctgcggcaaaaaccggctttatgggcaaactgcttggc
ggcctgaagaatctgttcggttcaacgccagagcctgaagctaaaccggctgtggttgaa
gaagttaaagcacagccagaagctaccgagactgaaaatcgtcgtaacaacgatcgtcgt
aatcaacgccgtcagggcacccgtcgcaatggtgaacgcggcgagcgcaatgagcgtagc
ggtgaacgtggcgagcgtaacggtgaacgtaataatcgtaatgaacgcagcgatcgtaac
gaacgttctgaccgcaccgagggtcgcaccgaccgtaccgagcgcaatgaccgcaacgaa
agccgcagcgagccgcgtgaagagaatcgtcgtaaccgtcgtaatcaagagcctgttgcg
gttgaagccgttgctcaggacgttgaaaacgtcgttaaccgcgaagaacagcagcagcct
cgtcgcgaacgtggagatcgctcacgccgtcgcaatgaagacaaacgcaaaaatcagccg
gaagataaagcggctgaaaacatcgtcgtggaagaagttgccgcagcgccagcaccggtt
gccgccgttgaagaccaggacgagcgcatgccgtctcagcgtcgccagcgtcgtcaactg
acccagaagattcgtttcgagtctgaagtggatcaggacgttgaagatgcagcacagatg
cttatcaccggtgttaaaccggccgagcgtccagctgaacctaaagcggccgaaccggca
ctgaatgatgcagcgaacgacgtggactccgaagatgcgcagggtgataacacccgtgaa
aacggtatgccacgccgctctcgtcgttctcctcgccacctgcgcgtcagcggtcaacgc
cgtcgtcgctaccgcgatgagcgttacccgactcagtccccaatgccattggccggtgcg
ttcgtgtcgccagaaatggcttcaggcaaagtgtggatctcctatcctgtcgttcaagct
gtcgatgccgttcagaacgttgagcaggaagcagcggcagcggacgttgccgtccaggcc
gcagtattgaccgagcaggttgttatcgcccaggaaaataccccagcgcctgcacaagtg
accccggttgccgaagtgaagccgacgccggtagaatctgcgccagccgttgaaactcac
gttccgacctctactctgacgtttgcagaagcgcaggaagtgatcgagcaagaagtcgaa
gcgactaaggccttcgttgccgctgaaccccacgtcgtagaaccgacgaccctcgaagcg
accgatgcagaagtccctgcaccgacgccaaccgagccagtggttgttgaacctgccgcc
gtggaagccgccgccgaagagcctgccgttgttgagccagcaaggtctgagcctgttgca
accgcagaggcagaagtcgtcaagccagccgcagtagaaccggttgccgaacctgtcgta
gaatctgcgaaagttgaagaagcgccggttgaagctgttaaaccgcaggtagaagacgcg
gttaaactcgaagttgcaggtattgaagcgacagaagctcaggctcctgctattgagatt
ccggcagcgccagcctctgttgcaccggttccagcgtcaaccgcagacgaccagccacgc
tttaagcatcacgccagtgcgccgatgactaaagcccctgctgccgcctacgttgcagag
ccagcacgcttcagcgattgggttcgcccggcatacgatttcgaaggtaaagggtctgcc
ggtggccacgccgccgccagcacctcgacggcaccggctaccaagccggaaatgccgcag
taa
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