Rhizobium bangladeshense: J2J98_08090
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Entry
J2J98_08090 CDS
T07228
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
rban
Rhizobium bangladeshense
Pathway
rban03030
DNA replication
rban03430
Mismatch repair
rban03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
rban00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
J2J98_08090 (dnaE)
03430 Mismatch repair
J2J98_08090 (dnaE)
03440 Homologous recombination
J2J98_08090 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
rban03032
]
J2J98_08090 (dnaE)
03400 DNA repair and recombination proteins [BR:
rban03400
]
J2J98_08090 (dnaE)
Enzymes [BR:
rban01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
J2J98_08090 (dnaE)
DNA replication proteins [BR:
rban03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
J2J98_08090 (dnaE)
DNA repair and recombination proteins [BR:
rban03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
J2J98_08090 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
DUF655
HROB
Motif
Other DBs
NCBI-ProteinID:
QSY90081
LinkDB
All DBs
Position
1675509..1679006
Genome browser
AA seq
1165 aa
AA seq
DB search
MAETQTGSIGEATGGEPGFIHLRVHSAYSLLEGALPLKKILYKATGDSQPAIAITDTNNL
FVALEFSQKAMDEGLQPIIGCQVSIDMEDGLESEKRGGQQALIKLPSIVLLAATDAGYER
LVDLVSRAYLGGDSNQAIHIRASWLEESGTEGLIALTGALTGPVDAAFREGHPAQAEARL
LTLKRLFGDRLYVELQRHGTYDKRHEQKIVRLAYTHDLPLVATNEAFFPTRDDYDAHDAL
MAVAHNAIVSDDSRFRLTPDHYLKSRAEMAKLFPDLPEALDNTIEIAKRCSFVLKTRKPI
LPRFTGATDDAEEAERAEAGELRRQAVEGLDMRLATLGMSPGYEEKDYRERLEFELSVIE
RMRFPGYFLIVSDFIKWAKQHDIPVGPGRGSGAGSLVAYALTITDVDPLRFSLLFERFLN
PERVSMPDFDIDFCQDRREEVIRYVQAKYGREQVAQIITFGSLQARAALRDVGRVLEMPY
GQVDKICKLVPNNPANPTPLSKAIEEEPKLQEEAAKEPVVARLLDIAQKIEGLYRHASTH
AAGIVIGDRPLSKLVPMYRDPRSDMPVTQFNMKWVEQAGLVKFDFLGLKTLTVLKVAVDF
VAKRGIKVDLAAIPLDDKKTYEMLSRGETVGVFQVESAGMRKALIGMKPDCIEDIIALVA
LYRPGPMENIPVYNARKHGEEEVESIHPMIDHLLKETQGVIVYQEQVMQIAQVLSGYSLG
EADLLRRAMGKKIKAEMDQQRERFVDGAVKNGVKKPQADVIFDLLAKFANYGFNKSHAAA
YAIVSYQTAYMKAHYPVEFLAASMTLDMSNTEKVNDFRQDAKRLGIEVIAPSVQTSFRHF
ETGDNRIYYALAALKGVGESAVDHIVEVRGDKPFASIEDFCLRIDPRQVNRRVLESLIYA
GAFDCFGTDRAQLAAGLDRILGYAQRAQENKLSGQSDIFGSTLTSGPEKISLPPYSPWLA
SERLLKEFQVLGFYLTAHPLDSYSNILQKMRVQTFAEFSAAIKQGAANARLAGTVISKQE
RKTRTGNKMGIIVFSDSSGQFEAVLFSEMLNQYRDVLESGKSFLLTATGEERPEGIGLRI
QTIQSLEEKSLQMQKALRVYVRDSGPLRMVAGHLNAKGDGLVSFIVIKEEGKREVEVALP
EKYRITPEIAAALRAAPGVVDVELV
NT seq
3498 nt
NT seq
+upstream
nt +downstream
nt
atggcggagacgcaaacgggttcaattggtgaggcgaccggtggcgaaccgggtttcatc
cacctgagggtccactccgcctattcgctgcttgagggcgccttgcctctgaagaagatc
ctctacaaggcgaccggcgacagccagccggcgatcgccatcaccgacaccaacaatctc
tttgtcgcccttgaattctcccagaaggcaatggacgagggcctgcagccgatcatcggc
tgccaggtctcgatcgacatggaagacggattggaaagtgaaaagcgcggcggtcagcag
gcactgatcaagctgccgtcgatcgttcttcttgcggcgacggacgccggttacgaaagg
ctggttgatctcgtcagccgcgcctatctcggcggtgatagcaaccaggccattcatatc
agagcctcctggctggaagagtcaggcacggaagggctgatcgccttgaccggcgccctg
actgggccggttgacgcggctttcagggaaggccatcccgctcaggcggaagcccggctg
ctcacgctgaagcgtctgttcggcgacagactctatgtcgagctgcagcggcacggcacc
tacgacaagcggcacgagcagaagatcgtcaggcttgcttacacgcatgacctgccgctc
gtcgccaccaacgaagccttctttccgactcgcgacgattacgacgcccatgatgcgctg
atggcggttgcgcataacgccatcgtctccgacgacagccgttttcgcctgacgccggat
cactacctgaagagccgggccgagatggccaagctctttcccgacctgccggaagcgctc
gataacacgatcgagatcgccaagcgctgctccttcgtgttgaagacgcgaaagccgatc
ctgccgcgcttcactggcgccaccgacgatgccgaggaggccgaacgcgccgaggcgggc
gaattgcgccgccaggcggtggaagggctggacatgcggcttgccacgctcggaatgtcg
ccgggttacgaggaaaaggattaccgcgagcgcctcgagttcgaactcagcgttatcgag
cgcatgcgcttcccgggttacttcctgatcgtttccgacttcatcaagtgggccaagcag
catgatattcccgtcggtccgggccgtggttcgggcgccggttcgctggtcgcctatgcc
ttgacgatcaccgatgtcgacccgctgcgcttctcgctgctcttcgagcgcttcctcaat
ccggaacgcgtctcgatgcctgacttcgacatcgacttctgccaggaccgccgcgaagag
gtgatccgctacgttcaggcgaaatatgggcgcgagcaggtggcgcagatcattaccttc
ggttcgctgcaggcacgcgccgcacttcgcgatgtcggccgcgtgctggaaatgccttac
ggccaggtcgacaagatctgcaaactcgtgccgaacaatccggccaatccgacgccgctc
tccaaggcgatcgaggaggagccgaagctgcaggaggaggcggcgaaggagccggtggtc
gcgcgtctgctcgacatcgcccagaagattgaagggctttatcgtcacgcctcgacgcat
gctgccggcatcgtcatcggcgaccgcccgctgtccaagctcgtgccgatgtatcgcgat
ccgcgctccgacatgcccgtcacccagttcaacatgaaatgggtggagcaggcaggcctc
gtgaagttcgacttcctcggcttgaagacgttgaccgtgctgaaggtcgccgtcgatttc
gtcgccaaacgcggcattaaagtcgatcttgcggccattccgctcgacgacaagaagact
tacgaaatgctgtcgcgcggcgagacggtcggcgtgttccaggtggaaagtgccggcatg
cgcaaggcgctgatcggcatgaagccggactgcatcgaggacatcatcgcgctggtggcg
ctctaccgcccgggcccgatggagaacatcccggtttataatgcccgcaagcacggcgag
gaggaggtggaatcgatccacccgatgatcgaccatctgctcaaggaaacccagggcgtc
atcgtctatcaggaacaggtgatgcagatcgcccaggtcctgtccggctattcattgggt
gaagccgatcttctgcgccgcgccatgggtaagaagatcaaggccgagatggaccagcag
cgtgagcgcttcgtcgatggcgcggtgaagaacggtgtgaagaagccgcaggccgacgtc
atcttcgatctcttggcgaaattcgccaattacggcttcaacaagtcgcatgccgccgcc
tatgccatcgtctcataccagacggcctatatgaaggcgcattacccggtcgagttcctc
gccgcttcgatgacgctcgacatgtccaacacggaaaaggtcaatgatttccgtcaagat
gccaaacgcctcggcatcgaggtgatcgcaccttcggtgcagacctccttccgccatttc
gagaccggcgacaaccggatctactatgcgctggccgccctcaagggcgtcggcgaatcc
gccgtcgaccatatcgtcgaggtgcgcggcgacaagcccttcgccagcatcgaggatttc
tgcctgcgcatcgatccgcgccaggtgaaccgccgcgtgttggaaagcctgatctatgcc
ggcgccttcgattgtttcggcacggaccgcgcccagcttgccgccgggctcgaccgcatc
ctcggctatgcccagcgcgcccaggaaaacaagctgagcggccagtcggatattttcggc
agtacattgacgtcaggtccggagaagatctccttgccgccttattcaccctggctggct
tcggagcggctgctcaaggaattccaggtgctgggcttctatctcacggcccacccgctc
gattcctacagcaacatcctgcagaagatgcgcgtgcagacctttgccgagttctccgcg
gcgatcaagcagggggctgccaatgcgcgccttgccggcaccgtcatctcgaagcaggag
cgcaagacccgcaccggcaacaagatgggcatcatcgtcttttccgactcgtcgggccag
ttcgaagccgtgctgttttcggagatgctgaaccagtatcgcgatgtgctcgagtccgga
aaatccttcttgctgaccgcgaccggcgaggagcggccggagggcatcggcctgcgtatc
cagacgatccagtcgctcgaggaaaagtcgctgcagatgcagaaggcgctgcgcgtctat
gtcagagattccggaccgctgagaatggttgccggccatctgaacgccaagggcgacggc
ctggtttccttcatcgtcatcaaggaggagggcaaacgcgaggtggaagtggcgctgccg
gagaaataccgcatcacgccggagatcgcagccgcccttcgcgccgcccctggcgtcgtt
gacgtcgaacttgtctga
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