Rhodothermaceae bacterium RA: AWN76_012700
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Entry
AWN76_012700 CDS
T04780
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
rbar
Rhodothermaceae bacterium RA
Pathway
rbar03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
rbar00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
AWN76_012700
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rbar03400
]
AWN76_012700
Enzymes [BR:
rbar01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
AWN76_012700
DNA repair and recombination proteins [BR:
rbar03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
AWN76_012700
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
TRCF
UvrB_inter
DEAD
Helicase_C
CarD_TRCF_RID
ResIII
Cas3-like_C_2
RecG_dom3_C
UB2H
AAA_22
Motif
Other DBs
NCBI-ProteinID:
ARA93931
LinkDB
All DBs
Position
3097443..3100802
Genome browser
AA seq
1119 aa
AA seq
DB search
MSLKTIYQRIAGSRVFHDAVAWSRTADAGDALHLKGTAGSLPAFVLRRIAQEIDRPLLCL
LADEDQAAYLYSDLEQLHGETDRLLRLPASGQTPYDDEQIGELAPVVERAEVIQRLAGGF
TGLLVASVDAVFEMLPPATTVMQETISLSIGDQVAPDEVIRRLTSQGFERVEFVERPGEM
ALRGGILDVFPFAGAYPIRIEFFGDEIDSLREFDAGSQRSVSRLKTARLVPNLEREAPSD
TPFTSLFAYLPAETLLVTFDEAHLIEKAGARFAEASAAFDALPDPTAHTPPARRYLDGAA
FERALLQHPRLLFGSFTGAGATEHLALDARPQPDFNRSMTRLREQVRRHAADHIATFILC
DSRGQEARLRELLEDELAAHDLTLSVESLHEGFELPSMGLAVYTDHQIFSRYHRPTARKR
KQRYGGLSLREIQHLTPGDFVVHIDYGIGKFAGLHKITVRGKQQEAVRVLFQGEDVLYVN
VNALHKLHKYTGKEGHQPRLTKLGSGQWEKTKARTKKRVKDIARDLIRLYARRKASRGYA
FPPDTVWQREMEASFEFEDTPDQAAASAAVKADMEEPVPMDRLVCGDVGFGKTEIAVRAA
FKAVQAGKQVAVLVPTTILAAQHTETFTRRLAPYPVRIEELSRFRSAEEQKQVLAAVQRG
EVDILIGTHRIAAKDVQFKDLGLLIIDEEQRFGVAVKEKLRKLRVDVDTLTLTATPIPRT
LQFSLLGARDLSIIATPPPNRQPIVTEIHTFDKDLIRDAILYEISRGGQVFFIHNRVQSI
DEMADTIRMLVPDVRARVAHGQMRPSQLEQVMHDFIERKFDVLVSTNIIESGLDISNANT
IIINRADRFGLAELHQLRGRVGRSDRKAFCYLLVPSIHSLTREGRQRLQAVEEFSDLGSG
FNIAMRDLDIRGAGNLLGAEQSGFIEDVGFETYHRILDEAVQELRAEEFADVFQDQAHAP
APVETQVDVEEDAFIPETYLSNHVERLNIYRRLSEADAEATLAELLAELEDRFGPAPAEV
TNLVTAMRIKLQAQTLRLAKVTFKNQRLFLTMPSQEEDAFFYEHRFHPLLERLSGLDRRF
VLRDTKSKRVRAILQDVPDLEAALRVMAHLTAESVTATS
NT seq
3360 nt
NT seq
+upstream
nt +downstream
nt
gtgtccctcaaaacgatttaccagcgcatagccgggtcgcgcgtgttccatgacgccgtg
gcctggagccggacggccgacgccggcgatgccctccacctcaaaggcaccgccgggtcc
ctcccggccttcgtcctccggcgcatcgcacaggagatcgaccgaccgctgctctgcctc
ctggcagacgaagaccaggcggcctacctctacagtgacctcgagcaactccacggggaa
accgaccgtctcctgcggctcccggcttccggtcaaacgccctacgacgacgaacagatc
ggcgagttggccccggtcgtggaacgcgccgaagtcatccagcgcctggccggaggcttc
accgggctgctcgtggccagcgtcgatgccgtcttcgagatgctcccgcccgccacgacc
gtcatgcaggagacgatctccctcagcatcggcgatcaggtggccccggacgaggtgatc
cgtcgcctcacgagccagggcttcgagcgggtcgagttcgtggagcgccccggcgaaatg
gcgctccgtggcggcatcctggacgtcttcccgttcgccggggcctatcccatccgcatc
gaattcttcggcgatgagatcgactcgctgcgggagttcgacgccggcagtcagcgctcc
gtcagccgcctcaaaaccgcccgtctggtgcccaacctggagcgggaggcgccctccgat
acgccctttacctccctcttcgcgtacctgcccgccgaaacgctgctggtcaccttcgac
gaggcacacctcatcgagaaggccggggcacgctttgccgaagcctcggccgccttcgac
gcactgccggacccgaccgcgcacacccccccggcccgccgctacctcgacggtgccgcc
ttcgaacgggccctcctgcaacacccccggctgcttttcggctcgttcaccggcgccggc
gccaccgaacacctcgcgctcgacgcccggccccagcccgatttcaaccgcagcatgacg
cggctgcgtgagcaggtgcgccgccatgccgccgaccacatcgccacgttcatcctgtgc
gacagccgcggccaggaagcgcggctgcgcgaactcctggaggacgaactggccgcccac
gacctcaccctcagcgtcgaatccctgcacgaaggcttcgagctgccctccatgggcctc
gccgtctacaccgaccaccagatcttcagccgctaccaccgcccgacggcccgcaagcgc
aaacagcgctacggcggcctcagcctgcgcgaaatccagcacctcacgccgggcgacttc
gtggtgcacatcgactacgggatcgggaagttcgccgggctccacaagatcaccgtccgc
ggcaagcagcaggaagccgttcgcgtgctcttccagggcgaggacgtgctgtacgtcaat
gtcaacgcgctgcataagctccacaaatacaccggcaaagaaggccatcagccccggctc
acgaagctcggctccggccagtgggaaaaaaccaaggcccggacgaagaagcgcgtcaaa
gacatcgcccgcgacctgatccggctctatgcccggcgcaaggcgtcacgcggctatgcc
ttcccgcccgataccgtctggcaacgcgagatggaggcctccttcgagttcgaggatacg
ccggatcaggccgcggccagcgccgccgtgaaagcggacatggaagagcccgtgccgatg
gaccggctcgtgtgcggggacgtcggcttcggcaagaccgagattgccgtgcgcgcagcg
ttcaaagcggtgcaggccggcaagcaagtggccgtgctcgtgcccaccaccatcctcgcg
gcacagcataccgagacgttcacccgccgcctcgccccctaccccgttcggatcgaagaa
ctctcccgcttccgctcggccgaagagcagaaacaggtcctcgccgccgtccagcgcggc
gaggtggacatcctcatcggcacccaccgcatcgccgcgaaagacgtgcagttcaaagac
ctcggcctgctcatcatcgacgaggagcagcgcttcggggtcgccgtcaaagaaaagctc
cggaagctgcgcgtcgacgtggacaccctcacgctgacggccacgcccatcccgcggacg
ctgcaattctccctgctcggcgcccgggatctctccatcattgcaacccccccgcccaac
cggcaaccgatcgtcaccgagatccacaccttcgacaaggacctcatccgcgacgccatc
ctctacgagatcagccgcggcggacaggtgttcttcatccacaaccgcgtgcagtcgatc
gacgagatggccgataccatccgcatgctggtgccggacgtgcgcgcgcgggtggctcac
gggcagatgcggcccagccagctcgaacaggtcatgcacgacttcatcgagcgtaagttc
gacgtgctggtctcgacgaacatcatcgagagcgggctcgacatctccaacgccaacacc
atcatcatcaaccgcgccgaccgcttcgggctggccgagttgcaccagctccgcggccgc
gtgggccgctccgaccgcaaggcgttctgctacctgctcgtgccctcgatccatagtctc
acgcgcgagggccggcagcgccttcaggccgtcgaggagttcagcgacctcggcagcggc
ttcaacatcgccatgcgcgacctcgacatccgcggcgccggcaacctgctcggcgccgag
cagagtgggttcatcgaggacgtgggcttcgaaacctaccatcgaatcctggatgaggcc
gtgcaggagcttcgtgccgaggagtttgccgacgtctttcaggaccaggcccacgcgccg
gccccggtcgagacgcaggtggacgtcgaggaagacgccttcatcccggaaacctacctg
agcaaccacgtcgagcggctgaacatctaccgccgcctcagcgaggccgacgccgaagcg
acgctcgccgagctgctggccgagttggaggatcgcttcggcccggcgcctgccgaggtc
accaacctggtcaccgccatgcggatcaagctccaggcacagacgctccggctggcgaag
gtgaccttcaagaaccagcggctcttcctgacgatgccctcgcaggaggaagatgccttt
ttctacgagcaccgcttccatcccctgctcgaacggctgagcgggctcgatcgccgcttc
gtcctgcgcgacaccaaaagcaaacgcgttcgtgccatcctgcaggacgtcccggacctg
gaggcggcgctgcgtgtgatggcacacctcaccgccgaatccgtgaccgcgacgtcctga
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