Rhinopithecus bieti (black snub-nosed monkey): 108520224
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Entry
108520224 CDS
T04641
Symbol
DDX39B
Name
(RefSeq) spliceosome RNA helicase DDX39B
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
rbb
Rhinopithecus bieti (black snub-nosed monkey)
Pathway
rbb03013
Nucleocytoplasmic transport
rbb03015
mRNA surveillance pathway
rbb03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
rbb00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
108520224 (DDX39B)
09122 Translation
03013 Nucleocytoplasmic transport
108520224 (DDX39B)
03015 mRNA surveillance pathway
108520224 (DDX39B)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rbb03019
]
108520224 (DDX39B)
03041 Spliceosome [BR:
rbb03041
]
108520224 (DDX39B)
Enzymes [BR:
rbb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
108520224 (DDX39B)
Messenger RNA biogenesis [BR:
rbb03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
108520224 (DDX39B)
Spliceosome [BR:
rbb03041
]
Complex C
Other components
EJC/TREX
108520224 (DDX39B)
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
108520224 (DDX39B)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Cas3-like_C_2
P-loop_SecA
Motif
Other DBs
NCBI-GeneID:
108520224
NCBI-ProteinID:
XP_017714973
LinkDB
All DBs
Position
Unknown
AA seq
435 aa
AA seq
DB search
MAENDVDNELLDYEDDEVETAAGGDGAEAPAKKDVKGSYVSIHSSGFRDFLLKPELLRAI
VDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMC
HTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALA
RNKSLNLKHIKHFILDECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCR
KFMQDVNTLLPSLPPLPARCLLPFLALFLRLPCHSSAKKAACAQLGVMTPHPTPQQVVIF
VKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGRGMDI
ERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNDVQDRFEVNISE
LPDEIDISSYIEQTR
NT seq
1308 nt
NT seq
+upstream
nt +downstream
nt
atggcagagaacgatgtggacaatgagctcttggactatgaagatgatgaggtggagaca
gcagctgggggagatggggctgaggcccctgccaagaaggatgtcaagggctcctatgtc
tccatccacagctctggctttcgtgacttcctgctcaagccagagttgctccgggccatt
gtcgactgtggctttgagcatccgtcagaagtccagcatgagtgcatccctcaggccatt
ctgggaatggatgtcctgtgccaggccaagtcgggcatgggaaagacagcagtgtttgtg
ttggccacactgcaacagctggagccagttactgggcaggtgtctgtgctggtgatgtgt
cacactcgggagttggcttttcagatcagcaaggaatatgagcgcttctctaaatacatg
cccaatgtcaaggttgctgttttttttggtggtctgtctatcaagaaggatgaagaggtg
ctgaagaagaactgcccgcatatcgtcgtggggactccaggccgtatcctagccctggct
cgaaataagagcctcaacctcaaacacattaaacattttattttggatgaatgtgataag
atgcttgaacagctcgacatgcgtcgggatgtccaggaaatttttcgcatgaccccccac
gagaagcaggtcatgatgttcagtgctaccttgagcaaagagatccgtccagtctgccgc
aagttcatgcaagatgtaaatacccttctaccttctctccctccactccccgcccgctgc
ctcctccccttcctcgccctcttcctcagactcccttgtcattcaagtgccaagaaggcg
gcttgtgcccaactgggagtaatgactccccaccccaccccccaacaggtggtgatcttt
gtgaagtctgtgcagcggtgcattgccttggcccagctactggtggagcagaactttcca
gccattgccatccaccgtgggatgccccaggaggagaggctttctcggtatcagcagttt
aaagattttcaacgacgaattcttgtggctaccaacctatttggccgaggcatggacatc
gagcgggtgaacattgcttttaattatgacatgcctgaggattctgacacctacctacat
cgggtggccagagcaggccggtttggcaccaagggcttggctatcacatttgtgtcggat
gagaatgatgccaagatcctcaatgatgtgcaggatcgctttgaggtcaatattagtgag
ctgcctgatgagatagacatctcctcctacattgaacagacacggtag
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integrated database retrieval system
