Rhinopithecus bieti (black snub-nosed monkey): 108521634
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Entry
108521634 CDS
T04641
Symbol
VPS39
Name
(RefSeq) vam6/Vps39-like protein isoform X1
KO
K20183
Vam6/Vps39-like protein vacuolar protein sorting-associated protein 39
Organism
rbb
Rhinopithecus bieti (black snub-nosed monkey)
Pathway
rbb04140
Autophagy - animal
rbb04148
Efferocytosis
rbb05132
Salmonella infection
Brite
KEGG Orthology (KO) [BR:
rbb00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
108521634 (VPS39)
04148 Efferocytosis
108521634 (VPS39)
09160 Human Diseases
09171 Infectious disease: bacterial
05132 Salmonella infection
108521634 (VPS39)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
rbb04131
]
108521634 (VPS39)
Membrane trafficking [BR:
rbb04131
]
Endosome - Lysosome transport
Tethering complex
Hops complex
108521634 (VPS39)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Vps39_2
Vps39_1
CNH
Clathrin
KCTD11_21_C
EcoR124_C
Motif
Other DBs
NCBI-GeneID:
108521634
NCBI-ProteinID:
XP_017717107
LinkDB
All DBs
Position
Unknown
AA seq
886 aa
AA seq
DB search
MHDAFEPVPILEKLPLQIDCLAAWEEWLLVGTKQGHLLLYRIRKDVVPADVASPESGSCN
RFEVTLEKSNKNFSKKIQQIHVVSQFKILVSLLENNIYVHDLLTFQQITTVSKAKGASLF
TCDLQHTETGEEVLRMCVAVKKKLQLYFWKDREFHELQGDFSVPDVPKSMAWCENSICVG
FKRDYYLIRVDGKGSIKELFPTGKQLEPLVAPLADGKVAVGQDDLTVVLNEEGICTQKCA
LNWTDIPVAMEHQPPYIIAVLPRYVEIRTFEPRLLVQSIELQRPRFITSGGSNIIYVASN
HFVWRLIPVPMATQIQQLLQDKQFELALQLAEMKDDSDSEKQQQIHHIKNLYAFNLFCQK
RFDESMQVFAKLGTDPTHVMGLYPDLLPTDYRKQLQYPNPLPVLSGAELEKAHLALIDYL
TQKRSQLVKKLNDSDHQSSTSPLMEGTPTIKSKRKLLQIIDTTLLKCYLHTNVALVAPLL
RLENNHCHIEESEHVLKKAHKYSELIILYEKKGLHEKALQVLVDQSKKANSPLKGHERTV
QYLQRLGTENLHLIFSYSVWVLRDFPEDGLKIFTEDLPEVESLPRDRVLGFLVENFKGLA
VPYLEHIIHVWEETGSRFHNCLIQLYCEKVQGLMKEYLLSFPAGKTPVPAGEEEGELGEY
RQKLLMFLEISSYYDPGRLICDFPFDGLLEERALLLGRMGKHEQALFIYVHILKDTRMAE
EYCHKHYDQNKDGNKDVYLSLLRMYLSPPSIHCLGPIKLELLEPKANLQAALQVLELHHS
KLDTTKALNLLPANTQINDIRIFLEKVLEENAQKKRFNQVLKNLLHAEFLRVQEERILHQ
QVKCIITEEKVCMVCKKKIGNSAFARYPNGVVVHYFCSKEVNPADT
NT seq
2661 nt
NT seq
+upstream
nt +downstream
nt
atgcacgacgctttcgagccagtgccgatcctagaaaaactgcctctgcaaatcgactgt
ctcgctgcctgggaggaatggcttcttgtgggaaccaaacaaggacatcttcttctctat
aggattcggaaggacgttgtgccagcagatgtagcatcacctgaaagtggcagttgtaac
agatttgaagtgacactagagaaatccaataagaacttctccaaaaagattcagcagatc
catgtggtttcccagtttaagattctggtcagcttgttagaaaataacatttatgtccat
gacctattgacatttcaacaaatcactacggtttcaaaggcaaagggagcatcactgttt
acgtgtgacctccagcacacagagaccggtgaggaggtgttacggatgtgtgtggctgta
aagaagaagctgcagctctatttctggaaggacagggaatttcatgaattgcagggggac
tttagtgtaccagatgtgcccaagtccatggcatggtgtgaaaattctatttgtgtgggt
ttcaagagagactactacctaatacgggtggatggaaaggggtctatcaaagagctcttc
ccaacaggaaaacagctggagcccttagttgcacctctggcagatggaaaagtggctgtg
ggccaggatgatctcaccgtggtactcaatgaggaagggatctgcacacagaaatgtgcc
ctgaactggacggacataccagtggccatggagcaccagcctccttacatcattgcagtg
ttgcctcgatacgtggagatccgaacatttgaaccgaggcttctggtccagagcattgaa
ttgcaaaggccccgtttcattacctcaggaggatcaaacattatctatgtggccagcaat
cattttgtttggagactcatccctgtcccgatggcaacccaaatccaacaacttctccag
gacaagcagtttgaattggctctgcagctcgcagaaatgaaggatgattccgacagtgaa
aagcagcaacaaattcatcacatcaagaacttgtatgctttcaacctcttctgccagaag
cgttttgatgagtccatgcaggtctttgctaaacttggcacagatcccacccatgtgatg
ggtctgtacccggacctgctgcccacagactacaggaagcagttgcagtatcccaaccca
ctgcctgtgctctccggggctgaattggagaaggctcacttagctctgattgactacctg
acacagaaacgaagtcaattggtaaagaagctgaacgattctgatcaccagtcaagcacc
tccccgctcatggaaggcactcccaccatcaaatccaagaggaagctgctgcagatcatc
gacaccaccctgctcaagtgctacctccatacgaatgtggccctggtggcccccttgcta
cgcctggagaacaatcactgccacattgaggagagcgagcacgtgctgaagaaggcccac
aagtacagtgagctcatcatcctgtatgagaagaaggggctccacgagaaagctctgcag
gtgctcgtggaccagtccaagaaagccaactcccctctgaaaggccacgagaggacagtg
cagtatctgcagcgtctgggcacagaaaacctgcatttgattttctcctactcagtgtgg
gtgctgagagacttcccagaagatggcctgaagatatttactgaagatctcccagaagtg
gagtctctgccacgggatcgagtcctcggcttcttagtagagaattttaagggtctggct
gttccttatctggaacacatcatccacgtttgggaggagacaggctctcggttccacaac
tgcctgatccagctgtactgtgaaaaggtgcaaggtctgatgaaggagtatctcctgtcc
ttccctgcaggcaagaccccagtcccagctggagaggaagagggtgaactgggagaatac
cggcaaaagctcctcatgttcttggagatttccagctactatgatccaggccggctcatc
tgtgattttccctttgatggcctcttagaagaacgagctctcctgttggggcgcatgggg
aaacacgaacaagctcttttcatttatgtccacatcttgaaggatacaaggatggctgag
gagtactgccacaaacactatgaccaaaacaaagatggcaacaaagatgtgtatctgtcc
ctgcttcggatgtacctgtcaccccccagcattcactgcctggggccaatcaagctggaa
ctgctggagccaaaagccaacctccaggctgccctgcaggtcctggagctgcaccacagc
aaactggacaccaccaaggccctcaaccttctgccagcaaacactcagatcaatgacata
cgcatcttcctggaaaaggtcttggaagaaaatgcacaaaagaaacggttcaatcaagtg
ctcaagaaccttctccatgcagagttcctgagggtccaggaagagcggattttacaccag
caggtgaagtgcatcatcacagaggagaaggtgtgcatggtgtgtaagaagaagattgga
aacagtgcatttgcaagataccccaatggagtggtcgtgcactacttctgttccaaagag
gtaaacccagctgacacttga
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