Rhinopithecus bieti (black snub-nosed monkey): 108535875
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Entry
108535875 CDS
T04641
Symbol
XRN1
Name
(RefSeq) LOW QUALITY PROTEIN: 5'-3' exoribonuclease 1
KO
K12618
5'-3' exoribonuclease 1 [EC:3.1.13.-]
Organism
rbb
Rhinopithecus bieti (black snub-nosed monkey)
Pathway
rbb03008
Ribosome biogenesis in eukaryotes
rbb03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rbb00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
108535875 (XRN1)
09123 Folding, sorting and degradation
03018 RNA degradation
108535875 (XRN1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rbb03019
]
108535875 (XRN1)
03009 Ribosome biogenesis [BR:
rbb03009
]
108535875 (XRN1)
03016 Transfer RNA biogenesis [BR:
rbb03016
]
108535875 (XRN1)
03036 Chromosome and associated proteins [BR:
rbb03036
]
108535875 (XRN1)
Messenger RNA biogenesis [BR:
rbb03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
108535875 (XRN1)
mRNA degradation factors
5'-3' decay
5' exonucleases
108535875 (XRN1)
Ribosome biogenesis [BR:
rbb03009
]
Eukaryotic type
Pre-60S particles
RNases
108535875 (XRN1)
Transfer RNA biogenesis [BR:
rbb03016
]
Eukaryotic type
tRNA degradation factors
Rapid tRNA decay (RTD) pathway factors
108535875 (XRN1)
Chromosome and associated proteins [BR:
rbb03036
]
Eukaryotic type
Gene silencing
piRNA pathway
108535875 (XRN1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
XRN_N
XRN_M
XRN1_D2_D3
XRN1_D1
SH3_12
Dicer_dimer
Motif
Other DBs
NCBI-GeneID:
108535875
NCBI-ProteinID:
XP_017737758
LinkDB
All DBs
Position
Unknown
AA seq
1706 aa
AA seq
DB search
MGVPKFYRWISERYPCLSEVVKEHQIPEFDNLYLDMNGIIHQCSHPNDDDVHFRISDDKI
FTDIFHYLEVLFRIIKPRKVFFMAVDGVAPRAKMNQQRGRRFRSAKEAEDKIKKAIEKGE
TLPTEARFDSNCITPGTEFMARLHEHLKYFVNMKISTDKSWQGVTIYFSGHETPGEGEHK
IMEFIRSEKAKPDHDPNTRHCLYGLDADLIMLGLTSHEAHFSLLREEVRFGGKKTQRVCA
PEETTFHLLHLSLMREYIDYEFSVLKEKITFKYDIERIIDDWILMGFLVGNDFIPHLPHL
HINHDALPLLYGTYITILPELGGYINESGHLNLPRFEKYLVKLSDFDREHFSEVFVDLKW
FESKVGNKYLNEAAGIAAEEARNYKEKKKLKGQENSLCWAALDKNEGEMITSKDNLEDET
EDDDLFETEFRQYKRTYYMTKMGVDIVSDDFLADQAACYIQAIQWILHYYYHGVQSWSWY
YPYHYAPFLSDIRNISTLKIHFELGKPFKPFEQLLAVLPAASKNLLPTCYQHLMTSEDSP
IIEYYPPDFKTDLNGKQQEWEAVVLIPFIDEKRLLEAMETCNHSLKKEERKRNQHSECLM
CWYDRDTEFVYPSPWPEKFPAIERCCTRYKIISLDAWRVDINKNKITRVDQKALYFCGFP
TLKHIKHKFFLKKSGVQVFQQSSRGENMMLEVLVDAESDELTVENVASSVLGKSVFVNWP
HLEEARVVAVSDGETKFYLEEPPGTQKLYSGRTAPPSKVAHLGDKEQSNWAKEVQGISEH
YLRRKGIIINETSAVVYAQLLTGRKYQINQNGEVRLEKQWSKQVVPFVYQTIVKDIRAFD
SRFSNIKTLDDLFPLRSMVFMLGTPYYGCTGEVQDSGDVITEGRIRVIFSIPCEPNLDAL
IQNQHKYSIKYNPGYVLASRLGVSGYLVSRFTGSIFIGRGSRRNPHGDHKANVGLNLKFN
KKNEEVPGYTKKVGSEWMYSSAAEQLLAEYLERAPELFSYIAKNSQEDVFYEDDIWPGEN
ENGAEKVQEIITWLKGHPVSTLSRSSCDLQILDAAIVEKIEEEVEKCKQRKNNKKVRVTV
KPHLLYRPLEQQHGVIPDRDAEFCLFDRVVNVRENFSVPVGLRGTIIGIKGANREADVLF
EVLFDEEFPGGLTIRCSPGRGYRLPTSALVNLSHGSRSETGNQKLTAIVKPQPAVHHYSS
NSSVSCGHLGGLNHSPQSLFVPTQVSAKDDDEFCNIWQSLQGSGKMQHFQPAVQEKGAVL
PQEISQVNQHHKSGFNDNSVKYQQRKHDPHRKFKEEDKSPKAECWSQKMSNKQPNSGIEN
FLASLNISKENEVQSSHHGEPPSEEHLSPQSFAMGTRMLKEILKIDGSNTVDHKNEMKQI
GNEIPVSSIRRDEYGLPSHPKQNKKLASYVNKPHSAREYHNVQSMDNVCWPAPSQIPPVS
TPVTELSRICSLVGMPQPDFSFLRTPQTMTVCQVKLSNGLLIHGPQCHSENEAKEKAALF
ALQQLGSLGVNFPLPSPVFANYPSAVPPGTIPPVFPPPTGWDHYGSNYALGAANIMPSSS
HLFGSMPWGPSVPVPGKPFHHTLYSGTMPMAGECQXGVHNQFIPLQVTKKRVANKKNFEN
KEAQSSQATPVQTSQPDSSNIVKVSPQESSSASLKSSQIAQPASSFQVETASQGRSISYH
KSTPSSSSRRKSRKLAVNFGVSKPSE
NT seq
5121 nt
NT seq
+upstream
nt +downstream
nt
atgggagtccccaagttttaccgatggatctcagagcggtatccctgcctcagcgaagtg
gtgaaagagcatcagattcctgaatttgacaacttgtacctggatatgaatggaattata
catcagtgctcccatcctaatgatgatgatgttcactttagaatttcagatgataaaata
tttactgatatttttcactacctggaggtgttgtttcgcattattaaacccaggaaagtg
ttctttatggctgttgatggtgtggctcctcgagcaaaaatgaaccagcagcgtgggagg
cgttttaggtcagcaaaggaggcagaagacaaaattaaaaaggcaatagagaagggagaa
actcttcctacagaggccagatttgattccaactgtatcacaccaggaactgaatttatg
gccaggttacatgagcatctgaagtattttgtaaatatgaaaatttccacagacaagtca
tggcaaggagttaccatctacttctcaggccatgagactcctggagaaggagagcataaa
atcatggaatttatcagatccgagaaagcaaagccagatcatgatccaaacaccagacac
tgtctttatggtttagatgctgacttgattatgcttggattaacaagtcatgaggcacat
ttttctctcttaagagaagaagttcgatttggtggcaagaaaacacaacgggtatgtgct
ccagaagaaactacatttcaccttctacacttgtctttaatgagagagtatattgattat
gagttttcagtattaaaagaaaagatcacatttaaatatgatattgaaaggataatagat
gattggattttgatggggtttcttgttggtaatgattttatccctcatctacctcattta
catattaatcatgatgcactgcctcttctttatggaacatatattaccatcctgccagaa
cttgggggttatattaatgaaagtgggcatctcaacttacctcgatttgagaaatacctt
gtgaaactatcagattttgatcgggagcacttcagtgaagtttttgtggacctaaaatgg
tttgaaagcaaagttggtaacaagtacctcaacgaagcagcaggtatagcagcagaagaa
gccagaaactacaaggaaaagaaaaaattaaagggccaggaaaattctctgtgttgggct
gctttagacaaaaatgaaggcgaaatgataacttctaaggataatttagaagatgagact
gaagatgatgacctatttgaaactgagtttagacaatataaaagaacatattacatgacg
aagatgggggttgacatagtatctgatgactttctggctgatcaagctgcatgttatatt
caggcaatacagtggattttgcactattactatcatggagttcagtcctggagctggtat
tatccgtatcattatgcacctttcctatctgatatacgcaacatcagtacactcaaaatc
cattttgaactaggaaaaccttttaagccgtttgaacagcttcttgctgtactgccagca
gccagcaaaaatttacttcctacatgctaccagcatttgatgaccagtgaagactcacca
attatagaatattacccacctgattttaaaactgacctaaatgggaaacaacaggaatgg
gaagctgtggtgttaatcccttttattgatgagaagcgattattggaagccatggagaca
tgtaaccactccctcaaaaaagaagagaggaaaagaaaccaacatagtgagtgcctaatg
tgctggtatgatagagacacagagtttgtctacccttctccatggccggaaaaattccct
gccatagaacggtgttgtacaaggtataaaataatatcattagatgcttggcgtgtagac
ataaacaaaaacaaaataaccagagttgaccagaaggcattatatttctgtggatttcct
actctgaaacacatcaaacacaaattttttttgaagaaaagtggcgttcaagtattccag
caaagcagtcgtggagaaaacatgatgttggaagtcttagtggatgcagaatcagatgaa
cttaccgtagaaaatgtagcttcatcagtgcttggaaaatctgtctttgttaattggcct
caccttgaggaagctagagttgtggctgtatcagatggagaaactaagttttacttggaa
gaacctccaggaacacagaagctttattcaggaagaactgccccaccatctaaagtggct
catcttggagataaagagcaatctaactgggcaaaggaagtacaaggaatttcagaacat
tacctgagaagaaaaggaataataataaatgaaacatctgcagttgtgtatgctcagtta
ctcacaggtcgtaaatatcaaataaatcaaaatggtgaagttcgtctagagaaacagtgg
tcaaaacaagttgttccttttgtttatcaaactattgtcaaggacatccgagctttcgac
tcccgtttctccaatatcaaaacattggatgatttgtttcctctgagaagtatggtcttt
atgctgggaacaccctattatggctgcactggagaagtgcaggattcaggtgacgtgatt
acagaaggtaggattcgtgtgattttcagcattccatgtgaacccaatcttgatgcttta
atacagaaccagcataaatattctataaagtacaacccaggatatgtgttggccagtcgc
cttggagtgagtggataccttgtttcaaggtttacaggaagtatttttattggaagagga
tctaggagaaaccctcatggagaccataaagcaaatgtgggtttaaatctcaaattcaac
aagaaaaatgaggaggtacctggatataccaagaaagttggaagtgaatggatgtattca
tctgcagcagaacaacttctggcagagtacttagagagagctccggaactatttagctat
atagccaaaaatagccaagaggatgtattctatgaagatgacatttggcctggagaaaat
gagaatggtgctgagaaagttcaagaaattattacttggctaaaaggacatcctgtcagt
actttatctcgttcttcttgtgatttacaaattctggatgcagctattgttgagaaaatt
gaggaagaagtcgaaaagtgcaagcaaagaaagaataataagaaggtgcgagtaacagtg
aagccccatttgctatacagacctttagaacagcaacatggagtcattcctgatcgggat
gcagaattttgtctttttgaccgtgttgtaaatgtgagagaaaacttctcagttccagtt
ggccttcgaggcaccatcataggaataaaaggagctaatagagaagctgatgtactgttt
gaagtattatttgatgaagaatttcctggaggattaacaataagatgctcgcctggtaga
ggttatcgactgccaacaagtgccttggtgaacctttctcatgggagtcgctctgaaact
ggaaatcagaagttgacagctattgtaaaaccacaaccagctgtgcatcactatagctca
aattcatcagtttcctgtgggcatttgggaggcctcaaccattcccctcaatcacttttt
gttcctactcaagtatctgctaaagatgatgatgaattctgcaacatttggcagtcctta
cagggatctggaaagatgcaacactttcagccagctgtacaagagaagggtgcagttcta
cctcaagaaataagccaagtaaaccaacatcataaatctggctttaatgacaacagtgtt
aaatatcagcaaagaaaacatgatcctcacagaaaatttaaagaagaggataagagtcct
aaagctgagtgttggtcccaaaaaatgtccaataagcagcctaactctggaattgagaac
tttctagcatctttgaatatctccaaagaaaatgaagtacagtcatctcatcatggggag
cctccaagtgaagagcatttatcaccacaatcatttgccatgggaacacggatgcttaaa
gaaattctaaaaattgatggctctaacactgtggaccataagaatgaaatgaaacagatt
ggtaatgaaatccctgtttcctctattagaagagatgaatatggattaccctctcaccct
aaacaaaataagaaattagcatcttatgtgaacaagcctcacagtgctcgtgagtaccat
aatgttcagtctatggacaatgtgtgttggcctgcccccagccagatccctcctgtatcc
acaccagtaactgaactttctcgaatttgttcccttgttggaatgccacaacctgatttc
tcctttcttaggacgccgcagacaatgactgtttgccaagtaaaattatctaatggctta
ctgatacatgggccacagtgccactctgaaaatgaagccaaggagaaagctgcacttttt
gctttacaacaattgggctccttaggcgtgaatttccctttgccttcaccagtatttgca
aattatccttcagctgtaccacccggaaccattcctccagtctttcccccacctactggc
tgggatcactatggaagcaactatgcattgggggcagctaatataatgccttcatcatct
catctctttggctcaatgccatggggaccatcagtgccagttcctgggaagcctttccat
catactttatattctgggaccatgcccatggctggggaatgccagnngggtgtgcacaat
cagtttatacctctgcaggttactaaaaaaagggttgcaaacaaaaagaactttgagaat
aaggaagcccagagttctcaagccactccagttcagactagccagccagattcttccaac
attgtcaaagtaagtccacaggagagctcatcagcttctttgaagtcctctcagattgct
caacctgcatcttcttttcaagttgaaacggcctctcaaggccgtagtatatcttaccat
aagtcaacaccaagctcttcttcaagaagaaaatcaagaaaactggctgtcaattttggt
gtttctaaaccttctgagtaa
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integrated database retrieval system
