Mucinivorans hirudinis: BN938_1040
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Entry
BN938_1040 CDS
T03205
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
rbc
Mucinivorans hirudinis
Pathway
rbc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rbc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BN938_1040
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rbc03019
]
BN938_1040
03400 DNA repair and recombination proteins [BR:
rbc03400
]
BN938_1040
Enzymes [BR:
rbc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
BN938_1040
Messenger RNA biogenesis [BR:
rbc03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
BN938_1040
DNA repair and recombination proteins [BR:
rbc03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
BN938_1040
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
RecQ_Zn_bind
ResIII
SKI
Motif
Other DBs
NCBI-ProteinID:
CDN31137
UniProt:
A0A060R7G1
LinkDB
All DBs
Position
complement(1020349..1022277)
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AA seq
642 aa
AA seq
DB search
MDSLSILKKYWGHSAFREYQSEIINSLLSGRDTVALLPTGGGKSVTYQVPAMMHQGVAIV
VTPLIALMKDQVEALRRRGIRAAAINSAMTLREIDIALDNCVYGDVKLLYIAPERINTPI
FRHRVMKMVVSLVAVDEAHCISQWGYDFRPSYLKIALLREWLPEVPFIALTATATKLVLE
DICDKLNLKNPNVFRSSFARENLAFVVRHTLNKLEHIARVINSMPGSSGIIYVRSRQDAQ
DIADHLRARGIAADFYHAGLGASIRNIKQNEWMQGKTKVIVATNAFGMGIDKADVRYVVH
HQIPESLEAYYQEAGRAGRDGKRSYAVLLYNEQDSEKATRRIANEYPERETIERVYEHIF
NHLQVSIGGGKGEIYDFKIWEFVSRYKLYTLTVLNAIKILELNGYMTLTDEMDNPTRIKF
RVARDELYRIQVERVDFDGFVKVLLRCYTGLFTQFVTIDEALLSRLSGYSEQRIVEMLME
LSRARVINYIPRRRSPLLILEEERLPLANLRIAPETYNRRKMQSELKVAAMLEYVREMSV
CRGVVLRNYFDDNRAEDCGVCDVCVGRRGSSPAETRQLQRAQSIEERIIEYLTHNPRGDI
HALMATMPLDPTRVMGSLRELMRRDVVVQLPGGELVLRPDGR
NT seq
1929 nt
NT seq
+upstream
nt +downstream
nt
atggactctctatcaattctcaaaaaatattggggacactccgccttccgcgagtatcag
agtgaaataatcaactctctgctcagcggacgggacactgttgccctgcttcccacgggc
ggtggcaagtcggtaacatatcaggtgccggctatgatgcaccagggggtagctattgtc
gttacgccgctcattgccctgatgaaagaccaggtggaggcactccgccgccgcggaatc
cgtgctgcggctatcaattcggcgatgactcttcgcgagatagatattgcgctcgataat
tgtgtatatggcgatgtgaagttgctctatattgcccccgaaaggattaataccccaatt
ttccgccatcgggttatgaagatggtagtctcgttggtggcggtggacgaggcgcactgc
atctcgcagtggggttatgacttccgtccgagttacttgaaaatagctctgttgagagag
tggttacccgaagtgccctttattgccctcaccgcaacggctacaaagcttgttttggag
gatatttgtgataaactcaatctcaaaaatcctaatgtctttcgttcgagttttgcccgc
gaaaatcttgcctttgttgttcgccacacgctaaataagttggaacacattgctcgagta
atcaactctatgcccggtagcagcggcattatttatgtgcgtagtcgtcaggatgctcag
gatattgccgaccaccttcgtgctcgcggaattgcggcagacttctaccacgccggcttg
ggagcttccattagaaatataaagcagaacgagtggatgcagggtaagaccaaggtgatt
gtggcaaccaatgcttttggtatgggtatcgacaaggctgatgtgcgttatgttgtccac
caccagatacccgaatctctcgaagcatactatcaggaggcgggacgcgccggcagggac
ggcaaacgctcctatgccgtgctactatacaatgagcaagacagcgagaaagccacccga
cgcatagccaacgaatatcccgaacgggaaacaatagagagggtttatgagcatattttc
aaccacttgcaagtatccattggcggtggcaagggggagatttacgatttcaagatatgg
gaatttgtgagtcgctacaagctctatactcttacggtgctcaatgcgataaagattttg
gagctcaatggctatatgaccctcacggacgagatggataatcccacgagaataaaattt
cgcgttgcgcgcgatgaactatataggattcaggtggagagggttgatttcgatggcttc
gtaaaggtgttgcttagatgctacacggggcttttcactcagtttgtcaccatagacgag
gctttgctttcgcgcctttcgggttactccgagcagcgtatcgtcgagatgttgatggaa
ctttcgcgcgcacgcgttatcaattatatcccgcgccgtcgctcgccgttgttgatattg
gaggaggagcgtctgccccttgcgaatctgcgtatcgcgcccgaaacctacaatagacgc
aagatgcagagtgagctgaaggttgctgctatgttggagtatgtgcgcgagatgtcggtg
tgccgcggggtggtgttacgcaactactttgatgataatcgggcagaggattgtggtgtt
tgtgatgtatgcgtaggacgtaggggaagttctccggcagagacaaggcagttgcaaaga
gcacaatccattgaggagagaatcatagagtacctcacacacaacccccgtggcgatatc
cacgccctgatggcgactatgccgctagaccccacacgcgtaatgggctcgcttagagag
ttgatgcggcgcgatgtggtggtgcaactgcccggcggggagttggtattgcgtcccgat
gggcggtag
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