Mucinivorans hirudinis: BN938_1298
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Entry
BN938_1298 CDS
T03205
Name
(GenBank) DNA-directed RNA polymerase beta' subunit
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
rbc
Mucinivorans hirudinis
Pathway
rbc03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
rbc00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
BN938_1298
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rbc03021
]
BN938_1298
03400 DNA repair and recombination proteins [BR:
rbc03400
]
BN938_1298
Enzymes [BR:
rbc01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
BN938_1298
Transcription machinery [BR:
rbc03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
BN938_1298
DNA repair and recombination proteins [BR:
rbc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
BN938_1298
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Apocytochr_F_C
Motif
Other DBs
NCBI-ProteinID:
CDN31387
UniProt:
A0A060R7W6
LinkDB
All DBs
Position
1291928..1296124
Genome browser
AA seq
1398 aa
AA seq
DB search
MSFNKKDTKQPGNFNRITISLASPETILERSSGEVLKPETINYRTYKPERDGLFCERIFG
PVKDFECHCGKYKRIRYKGIVCDRCGVEVTEKKVRRERSGHISLVVPVAHIWYFRSLPNK
IGYLLGVPTKKLDAVIYYERYIVVNKGVASGVENGELLAEKEYLDLLATLPKGNQQLEDG
HPDKFEAKMGAEAIYEMIQKVDLDALSYSLRHKANTETSQQRKAEALKRLYVVEAFRESR
EINKPEWMIMKVLPVIPPELRPLVPLDGGRFATSDLNDLYRRVIIRNNRLKRLIEIKAPE
VILRNEKRMLQEAVDSLFDNSRKSNAVKTESNRPLKSLSDSLKGKQGRFRQNLLGKRVDY
SARSVIVVGPELKMHECGIPKDMAAELYKPFIVRKLIERGIVKTVKSAKKIIDRKDSVVW
DILENVIKGHPVLLNRAPTLHRLGIQAFQPKLIEGKAIQLHPLSCTAFNADFDGDQMAVH
LPLGNAAILEAQILMLGSHNILNPANGAPITVPSQDMVLGLYYMTKERKDVKGEGLVFYS
PEEAIIAYNEKRAGLHAKVKLRLGTGNLIDTTVGRIIFNEHVPVEAGYINELLTKKNLRD
TIGSIMKKAGAAKTATFLDDIKSLGYQMAFRGGLSFNLEAVIIPKEKEKLVAEGYTQVEE
VMENYNMGMITNNERYNQVIDIWTNVNSRLSNAVKKQLVEDMDGFNPVYMMMHSGARGSE
AQIRQLSGMRGLMAKPQKSSADSAQIIENPILANFKEGLSVLEYFISTHGARKGLADTAL
KTADAGYLTRRLVDVAQDVIVSQEDCGTLRGLQTMALKRNEEEVASLYDRILGRTSVHDV
INPQTNELLVRAGEEIDEEVALAIEKSPIEMVEIRSVLTCESRKGTCAKCYGRNLSTGRM
AQMGEVVGVIAAQSIGEPGTQLTLRTFHVGGVAGGSVVDNKITARYDGRIVIEEIRAVER
KNDSGGKYFVIISRMAEVKIVDENTGQTLFTTPLPYGGSLHFANGSTVKKGDVICEWDPY
NAVIISEFQGKVAFESLIEGITYREEMDEATGFREKVIIESKAKDKNPVIRIVDKEGLEL
KQYNLPVGAHISVKDGAKISAGDILIKIPRVVGKAGDITGGLPRVTELFEARNPSNPAVV
SEIDGEVSYGKIKRGNREIIVTSRLGEVKKYLVPLAKQILVQENDFVRAGMALSEGAVTP
GDILSIQGPTKVQEYIVNEIQEVYRLQGVKINDKHFEIIVRQMMNKVRIEDPGDTRLLEE
QVVDKWEFMMVNDEIYDKKVITAAGSSTELKEGQIVTLRQLRDENSILKRKGLSPVEYRD
AVPATSTQILQGITRAALQTSSFMSAASFQETTKVLNEAAIFGKVDPLGKLKENVICGHL
IPAGTGLRKYADLEVSVK
NT seq
4197 nt
NT seq
+upstream
nt +downstream
nt
atgtcatttaataaaaaagatacaaaacagccgggtaatttcaatcgaattaccatctcg
cttgcctcgccagaaacgattttggagcggtcgagcggtgaagtgctaaaacccgagacc
atcaactaccgcacatacaaacctgagcgtgacggtctcttctgcgaacgcatcttcggt
cctgtcaaagatttcgagtgccactgcggtaagtacaaacgtattcgttacaagggtatc
gtttgcgaccgatgcggggtggaagttaccgaaaagaaggttcgccgcgaacgctcggga
cacatctcgcttgttgtgcccgtggctcacatatggtatttccgcagcctgccaaacaag
attggctacctgctgggcgtgccaactaagaaactggatgccgtaatctattacgagcga
tatattgttgttaataaaggcgttgccagcggtgttgagaatggcgaactgctggctgag
aaggaatatctcgatttgttggctaccctgccaaagggaaatcagcagctggaggacgga
caccccgacaagttcgaggctaagatgggtgccgaggctatctacgagatgattcagaag
gtagacctcgatgcgctctcatactcgcttcgccacaaggctaacaccgaaacttcgcaa
cagcgtaaagctgaggcgctgaagcgcctatatgtcgtagaggcattccgcgaaagccgc
gaaattaataagcctgagtggatgattatgaaggttctgccggtgattccgcccgagctt
cgtcctcttgtgccattggacggcgggcgttttgctacgtcggacttgaacgacttgtat
cgccgcgttatcattcgtaacaaccgtctaaagagactaatagagattaaagctccggaa
gtcatcctacgtaacgagaaacgtatgttgcaggaagctgtggatagcctttttgataac
tcacgtaagtctaatgctgttaaaaccgaatcaaatcgtccgcttaaatcattgagcgac
tcattgaagggtaaacagggacgtttccgccaaaatcttttgggtaaacgtgtggactac
tcggcgcgttcggttatcgtggtaggtcctgagttgaagatgcacgagtgtggtattccc
aaggatatggcggcagagctctacaagccgtttatcgttcgtaaacttattgaacgcggt
atcgtaaaaacggtaaaatcggctaagaaaatcatcgaccgtaaggattctgttgtgtgg
gatattctcgaaaatgtgattaagggacaccccgttctactgaaccgtgctccgaccctt
caccgtctcggtatccaagcgttccagccaaaactgattgagggtaaggctatccagctc
cacccactatcttgtactgcattcaacgccgactttgacggtgaccaaatggcggtgcac
ttgcccctgggcaatgccgcaatattggaggctcagattttgatgctcggctcgcacaat
atcctcaaccctgccaatggcgcacccattactgtcccttcacaggatatggtgcttggt
ctgtattatatgaccaaggaacgtaaagatgttaagggcgagggacttgtattctattct
ccggaggaggcaatcattgcgtataacgaaaaacgtgccggtttgcacgcgaaggtaaaa
cttcgtcttggcacgggtaacctgattgatacaaccgtagggcgtattatctttaatgag
cacgtacccgtagaggcaggctacattaatgaacttctcacgaagaaaaacttgcgcgac
actatcggctctattatgaagaaggcgggagcagcaaaaactgcaactttcctcgacgat
attaagagtctcggttaccagatggcattccgcggcgggttgtccttcaacctcgaagct
gtgattatccccaaggagaaagaaaaactcgtagccgaggggtatactcaggttgaggag
gttatggagaactacaatatgggtatgattaccaacaacgagcgctacaaccaggttatc
gatatttggacgaacgtaaactcgcgcctgtcgaacgccgtgaagaagcagttggtggag
gatatggacggtttcaacccggtatatatgatgatgcactcaggtgcgcgtggttcggag
gctcagattcgtcagctctccggtatgcgtggtctgatggcaaaacctcagaagtcatct
gctgactcggcacagattatcgagaacccaatcttggcgaacttcaaagagggtctctcg
gttttggaatactttatctctactcacggtgcgcgtaagggtcttgccgacacggctctc
aagactgccgatgccggctacttgacacgccgtttggtggatgtggctcaggatgtgatt
gtctctcaggaagattgtggcacgctacgcggtctgcaaactatggcactcaaacgtaac
gaagaggaggtggcatcgctctatgaccgcattttgggacgtacctccgtgcacgatgtt
atcaatccgcaaaccaatgagttgctggtgagagccggcgaggagattgatgaagaggtg
gcactagccatcgaaaagtcgcctatcgagatggtggagattcgttcggtgctcacctgc
gaaagccgcaagggtacttgcgccaaatgttacggacgtaacctctcgacgggtcgtatg
gcacaaatgggtgaagttgtgggtgttatcgcagcacagtctattggtgaacccggcaca
cagcttactctgcgcacattccacgtcggtggtgttgcgggtggctcggtggtggacaac
aagattacggcacgctatgacggtcgcattgtgattgaagaaattcgtgccgtggagcgc
aaaaacgactccggcggcaaatacttcgtcattatcagccgtatggcggaggtgaaaatt
gtggatgaaaatacgggtcagacactcttcacaacgccgcttccttatggtggttcgctc
cacttcgcaaacggaagcacggtgaaaaaaggtgatgtaatttgtgagtgggacccatac
aatgccgtgattatctctgaattccaaggtaaggttgccttcgagtctttgattgaaggt
atcacctaccgcgaggagatggacgaggcaacaggcttccgcgagaaggtcatcatcgaa
tctaaggcgaaggacaaaaaccccgttatccgaattgtggataaggagggtcttgaactt
aaacaatataacctgcccgtgggtgcgcacatttcggttaaggacggtgcgaaaatctcg
gctggcgacatattgataaaaattccacgcgttgtgggtaaggcgggtgacatcaccggt
ggtcttccacgcgtgacagagctcttcgaggcgcgtaaccccagcaacccggcggttgtt
tcggaaatagacggcgaggtgagctacggtaaaatcaagcgcggtaatcgtgaaataatt
gtaacttcacgccttggtgaggtcaagaaatatcttgttccgttagctaaacagattctg
gttcaggagaatgacttcgttcgtgccggtatggctctctcggagggggctgtcactccc
ggcgacatcctctcaatccaaggacctacgaaggttcaggagtatatcgttaatgaaata
caggaagtttaccgcttacagggtgtgaagattaacgacaaacacttcgagattatcgtt
cgccagatgatgaacaaagtgcgtattgaggacccgggtgacacacgccttttggaagag
caagttgtggataagtgggaatttatgatggttaatgacgaaatttatgacaagaaggta
atcacggcggcaggtagctcgacggagttgaaagagggacagattgttacccttcgtcag
ttgcgcgatgaaaactcgatactcaaacgtaaagggctttcgcccgtggagtatcgcgat
gctgtgccagcaacttccacccagattttgcagggtatcacacgcgccgctttacaaaca
agtagctttatgtcagccgcttcgttccaagagaccaccaaggttcttaacgaggctgca
atcttcggcaaggtagacccattgggtaaactgaaagagaacgtcatctgcggacactta
attcctgccggaacagggctccgcaaatatgcggacttagaggtttcggtgaaatag
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