Mucinivorans hirudinis: BN938_1517
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Entry
BN938_1517 CDS
T03205
Name
(GenBank) Transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
rbc
Mucinivorans hirudinis
Pathway
rbc03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
rbc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
BN938_1517
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rbc03400
]
BN938_1517
Enzymes [BR:
rbc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
BN938_1517
DNA repair and recombination proteins [BR:
rbc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
BN938_1517
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
RecG_dom3_C
Cas3-like_C_2
AAA_22
Phosphonate-bd
Zeta_toxin
Motif
Other DBs
NCBI-ProteinID:
CDN31604
UniProt:
A0A060RD91
LinkDB
All DBs
Position
1529537..1532830
Genome browser
AA seq
1097 aa
AA seq
DB search
MTHKELIDKIEKAAAPEQLFASDDATLRLRGVSGSMLSFLVAGEFRRRGGVQVVVMEDRD
AASYLYADIYNILGQFSAAEDKVFLLPTAYKRSIQTQKEDASGIVQRTAVLSSLGGEQQP
PIIIATYPEALAEMVVDRVRLAENTLTINVGDKLSISFVEEVLVSMSLVKVDFVYEPGQY
SVRGGIVDIFSYSAPKPYRIDFFGDEVDSIRIFNISNQLSYEKVERVEVIPNLKSEQSRV
SLAEYIGEQATIWFDSATRALQKIDDLRKKLLGELEEPATIDLHTTSARALLDDTKRWRW
RYLDSDCPRRSYDGEIEFHTAPQPAFNKNFEALAKDIRQGENSHYTTYILTENRAQIERL
ENILSQIAGGKTAFGSCLLTISRGFIFAQERLALYTDHQIFDRHLRYKIHNEIDRSESIT
IAELNALKIGDYVVHIEHGVGQFGGLVRQHSQGKTKEFVKLTYKDGDTLFVNVHSLHRIS
KYKDKESPVPPKVHKLGSGAWQRLKSTTKAKIKDIARELIALYAKRKATEGFAFSPDNYL
QTELESSFIYEDTPDQRSATDAIKADMERAEPMDRLVCGDVGFGKTEVAMRAAFKAVLDG
KQVAVLVPTTVLSLQHYRTFNKRLRDFSVTVENFSRVKTTKQTHEILDKLKEGKIDILIG
THKLLGKMVDFKDLGLLIIDEEQKFGVSSKEKLRHLKANVDTLTLTATPIPRTLQFSLMG
ARDMSVINTPPPNRQPVATEVHVYNEDIIREAIEYEMQRGGQIFFVNNRIDNIFRIKSTI
ERLCPKAKVAVGHGQMAATELEEVMMDFIFGEYDVFVATAIIESGIDIPNANTIIINNAQ
NFGLSDLHQLRGRVGRTNRKAFCYLMIPGEEAITSDAHRRLRAIEEFSDLGSGFNIAMQD
LDIRGAGNVLGAEQSGFIADIGFETYQKIMAEAVAELREEQGLEPEAASIECHIESETTA
HIPDSYIGNANEKLRLYREMDHITRPEDMQAFITRLRDRFGEPPSDVYELCDIILLRHAA
ASAGFEKVTLKNGISRLTFAAANNNAYYKTAKFHSLLKKVSENGSKYKLDSAGNNKLVLI
VRSMKNFAALTEEIQNL
NT seq
3294 nt
NT seq
+upstream
nt +downstream
nt
atgacccacaaagagttaatagataaaattgagaaagctgccgcacccgagcagcttttt
gcgtcggatgatgccacccttcgtttgaggggagtgagcggttcgatgctctcgtttttg
gtggcaggagagtttcgtcgccggggcggtgtgcaggtggtggtgatggaggatagagat
gcggcaagctacttgtatgcagatatttataacattctcgggcaattttcggcggctgag
gataaggtgtttttgttgcccacagcatataaacgctctatccagacccaaaaagaggat
gcctcgggcatagtccaacgcaccgccgtcttatcttcacttgggggagaacagcagcca
ccgattattattgccacctatcccgaagcccttgccgaaatggtggtggacagagtacga
ctcgcagaaaacacgcttacaataaacgttggtgataaattgagtatctcttttgtcgaa
gaggtgcttgtttcgatgagtctggtaaaggttgattttgtatatgagccggggcaatat
tcggttcgcgggggtattgtcgatattttttcatattcagctcccaagccctatcggatt
gatttttttggcgatgaggtggattctattaggatttttaatataagcaaccaactctcg
tatgagaaggtagagagggtcgaagttattccaaatctcaaaagtgagcagtcgcgggtt
tccctagcggagtacataggagagcaggcgactatttggttcgattcggcaactcgcgct
ctgcaaaagattgatgacctgcgtaaaaagctactcggcgagttggaagagccggcaacc
atcgacctccacacaacaagtgcgcgagctttattggacgacacgaagaggtggcggtgg
cgatacttggacagcgactgcccccggcggagttatgacggcgaaatagagttccatacc
gcaccgcaaccggctttcaacaagaatttcgaggcactcgccaaggatattcgccagggt
gagaatagccattatacaacctatatactcaccgaaaatcgagcacagattgagcgtctg
gaaaatatactctcgcaaatcgccggtggcaagaccgcctttggaagctgtttgctgaca
ataagtcgcggatttatctttgcccaagagaggttggcactctacaccgaccaccagatt
ttcgaccgtcatcttcgctacaagattcacaacgagattgaccgctcggagtccatcacc
attgccgagcttaatgcgttgaaaataggggactacgtggtgcatatcgagcacggtgtg
ggtcagtttggcggacttgttcgtcagcatagccaggggaagaccaaggagtttgtaaag
ctcacctacaaggatggcgacacgctctttgtcaatgtccattctctgcaccgaatcagc
aaatataaggataaggagagtcccgttccgcccaaggtgcacaagctgggcagcggcgcg
tggcaacgactcaagagcacgaccaaggcaaagataaaagatatagcacgtgagcttatc
gccctctatgccaagcgaaaagccaccgaggggtttgccttttcgcccgacaactacctg
caaacggagcttgaaagctccttcatatacgaggatacgcccgaccaacgttcggctacg
gatgccataaaggcggatatggagcgtgccgaaccgatggacagattggtctgcggtgat
gttggctttggcaagacggaggtagcgatgcgtgccgccttcaaggcggtgttggatggc
aaacaagtggcagtgcttgtccccacaacggtcttgtcgctacaacattaccgaaccttc
aataagagattgagagatttttccgtaactgtcgaaaacttctcgcgggtgaaaaccacc
aaacagacccacgagattctcgacaaactcaaagagggcaagattgatatattaatcggc
actcataaactgctgggaaagatggtggatttcaaggatttaggcttgttgataattgac
gaagagcaaaaattcggcgtttcgagcaaggagaagctgcgccacctgaaagccaatgta
gataccctcaccctcaccgccacacccattccgcgaacgctccaattctcactgatgggt
gcgcgcgatatgagcgtgataaacactccgccccccaaccgccaacctgtggcaacggag
gttcacgtctataacgaggacattatccgcgaggctatcgagtacgagatgcagcggggc
ggtcagatattctttgtcaataatcgcattgataatatattcagaatcaaatccacaatc
gagcgtctatgccccaaggcaaaggttgccgtgggacacgggcagatggctgccaccgag
ctggaggaggtgatgatggactttatctttggtgagtatgatgtatttgtggcaactgcg
attatcgagagtggcatcgacatacccaatgccaacacgattataataaataatgcccaa
aatttcggactctccgatttgcaccagctacgcggacgggtaggtagaaccaaccgcaaa
gcattctgttacttgatgatacccggcgaagaggcaatcacgagcgatgctcatagaaga
ttgagggcaatcgaggagttttctgatttgggcagcggattcaacatcgcgatgcaggac
ttggacattcgcggagccggcaatgtactgggtgcagagcagagcggatttattgccgac
ataggtttcgagacctatcaaaagattatggcagaggctgttgccgaactacgcgaggag
caggggctcgagcccgaggcggcatccatcgagtgccatatcgagagcgaaaccaccgcc
cacattcccgacagctacatcggcaacgccaacgagaagttacgcctctaccgcgagatg
gaccacatcacccgccccgaagatatgcaggcgttcatcactcgcctcagagaccgcttc
ggcgaaccgccatcggacgtttacgagctatgcgacattattttgctgcgccacgctgcc
gcctctgccggcttcgagaaagttactttgaagaacggcatctcgcgccttacctttgcc
gccgccaataataatgcgtattacaaaaccgcgaagttccacagccttctcaaaaaggtg
tcggagaatggaagtaaatataaattagactcggcaggcaataataagttggttttgata
gttagaagtatgaaaaatttcgcggcgctcacagaggagattcagaatctgtaa
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