Aerosticca soli: ALSL_0409
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Entry
ALSL_0409 CDS
T06043
Name
(GenBank) DNA topoisomerase IB
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
rbd
Aerosticca soli
Brite
KEGG Orthology (KO) [BR:
rbd00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
rbd03032
]
ALSL_0409
03400 DNA repair and recombination proteins [BR:
rbd03400
]
ALSL_0409
Enzymes [BR:
rbd01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
ALSL_0409
DNA replication proteins [BR:
rbd03032
]
Prokaryotic type
DNA Topoisomerases
ALSL_0409
DNA repair and recombination proteins [BR:
rbd03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
ALSL_0409
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_I
Top1B_N_bact
Motif
Other DBs
NCBI-ProteinID:
BBD79080
UniProt:
A0A2Z6E223
LinkDB
All DBs
Position
complement(469552..470601)
Genome browser
AA seq
349 aa
AA seq
DB search
MSEPAAIPPELRAEARAAGLVYVSDRQPGIRRLRRGKAFRYVDADGRPVTAADALARIRA
LAIPPAYEDVWICADPRGHLQATGRDARGRKQYRYHPRWRALREHGKFDRVAAFGAALPA
LRRRVGRDLARPGLPREKVLALVVRLLDQTLIRIGNECYARDNRSYGLTTLRSRHVRVAR
GRLVFTFRGKSGQDHALVLDDRRLAAIVRRVQQLPGQRLFQYLDDTGAREPVDSGQVNDY
LRAVCGTDFSAKDFRTWGGTVHAARVLAATPLPASGGERARRRALAAAVAEVACVLRNTP
AVCRASYIHPRIFEGWHDGSLQRAFASPCRNLRELERRTLRYLERRRPR
NT seq
1050 nt
NT seq
+upstream
nt +downstream
nt
atgagcgagcccgccgcgatcccgcccgagctgcgcgccgaggcgcgcgccgccggactg
gtctacgtcagcgaccgccagcccggcatccgccggctgcggcgcggcaaagcgttccgc
tatgtcgatgccgacggccggccggtcaccgccgcggacgcactggcccgcatccgcgcg
ctggcgataccaccggcctacgaggacgtgtggatctgcgccgatccgcgcgggcacctg
caggccaccgggcgcgatgcgcgcggccgcaagcagtaccgctatcacccgcgctggcgt
gcgctgcgcgagcacggcaagttcgatcgcgtggccgccttcggcgcggcgctgccggcc
ttgcggcgccgcgtcggccgcgacctggcgcgcccgggcctgccacgcgagaaggtgctg
gcgctggtggtgcgcctgctcgaccagacgctgatccgcatcggcaacgaatgctacgcc
cgcgacaaccgcagctacggcctgaccacgctgcgctcgcgtcacgtgcgggtcgcgcgc
ggccgcctggtcttcaccttccgcggcaagagcgggcaggatcacgcactggtcctggac
gaccggcgattggcggcgatcgtgcgccgcgtgcagcagctgcccgggcagcgactgttc
cagtatctggacgacaccggcgccagagagccggtggattcgggccaggtcaacgattac
ctccgcgcggtctgcggcaccgacttcagcgccaaggacttccgcacctggggcggtacg
gtgcacgcggcgcgcgtgctggcggccacgccgctgccggcgagcggcggcgaacgggcg
cgccggcgtgcactcgccgcggcagtggccgaggtggcctgcgtactgcgcaacacgccg
gcggtgtgccgcgcctcgtacatccatccgcgcatcttcgaaggctggcacgacggcagc
ctgcagcgcgccttcgcctccccgtgccgcaacctgcgcgagctggagcggcgcacgctg
cgctacctcgaacgcaggcgcccgcgctga
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