Aerosticca soli: ALSL_1222
Help
Entry
ALSL_1222 CDS
T06043
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
rbd
Aerosticca soli
Pathway
rbd03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
rbd00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
ALSL_1222
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rbd03400
]
ALSL_1222
Enzymes [BR:
rbd01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
ALSL_1222
DNA repair and recombination proteins [BR:
rbd03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
ALSL_1222
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
MFD_D3
Helicase_C
CarD_TRCF_RID
ResIII
Cas3-like_C_2
UB2H
AAA_30
ERCC3_RAD25_C
AAA_25
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
BBD79881
UniProt:
A0A2Z6E560
LinkDB
All DBs
Position
complement(1295041..1298535)
Genome browser
AA seq
1164 aa
AA seq
DB search
MPDPIVHPPLPTSAKHRRYWTPPHGSSRALLLAEAARVHQGLLVAVSRDAQRASALEEEL
RLFAGDLPVLHFPDWETLPYDVFSPHPEIVSQRIATLYRLPTVTRGVLVVPVATLMQRLA
PRSHITSGLVVRRGQRMDLATERRRLEAAGYRNVPQVGDPGEYAVRGALIDIFPMGAAEP
YRIELFDDEVDSIRSFDPESQRSQHPVDAVELLPGREFPLTEEAVRDFRNRLRERFPIDV
RRCPLYQDMKEGVTPGGIEYYLPLFFDEPRQDGHDAASDPHAHGTATLFDYLAEDALFVL
GEGALEAAEQFWAQTGERYAQRAHDIERPVLPPAELYLPPERLREQLNRKPRVEIVAAGH
PHALDTGTEAAPELPLNRKGEAAGASLRRFLTDYAGRVLIAADSAGRREALLETLAEAGL
KPAAVEHWAAFLAGDAPLAITVAPLEQGFALRRPALTVLTERELYGERVRTERRRRRGAA
RDPEAVIRDLTELSIGAPIVHVDHGVGRYQGLVTMELGGMEGEFLVIEYAKGDKLYVPVA
QLGLVSRYSGTAPELAPLHSLGGDAWERARRKAAEKARDVAAELLAIYAQREARGGQALA
IDRPLVEAFGAGFPFEETPDQQQAIDAVLADLAAPRAMDRVICGDVGFGKTEVALRAAFA
VATAGKQVAVLVPTTLLAQQHYRTFADRFADWPVKVDVLSRFKSTKEVNDALKRLAAGDI
DVIIGTHKLLQPEVKFKDLGLVIVDEEQRFGVRQKEQLKKLRAEVDLLTMTATPIPRTLN
MAMGGLRDLSLITTPPAHRMAVRTFISTWEPALIREAFQRELARGGQVYFLHNEVDSIER
TARELGELIPEARIGIAHGQMPERELERVMADFHRQRFNVLVCTTIIETGIDIPTANTII
IDRADRFGLAQLHQLRGRVGRSHHRAYAYLIVPDRKAMTADAEKRLEAIASLEELGAGFT
LATHDLEIRGAGELLGDEQSGQIQEIGFGLYTELLDRAVRALKSGKVPDFDLSSEHETEV
ELHLPALIPDDYLPDVHTRLTLYKRIASARDGEALRELQVEMIDRFGLLPEPTKTLFAVA
ALKLAATPLGIRKLDFGPNGGRITFREKPDIDPMAIIRLIQSQPRVYKLDGQDKLRITLD
LPGAAERLRAAQDVLVQLGARRPL
NT seq
3495 nt
NT seq
+upstream
nt +downstream
nt
atgcctgatccgatcgtccatccgccgctgcccacttccgccaaacaccgccgctactgg
acgccgccgcacggctcctcgcgcgccctgttgctggccgaggccgcgcgcgtgcaccag
ggattgctggtcgcggtgagccgcgacgcccagcgggcgagcgcgctggaggaggaattg
cgcctgttcgccggcgacctgccggtgctgcatttccccgactgggaaacgctgccctac
gacgtgttcagcccgcacccggaaatcgtttcccagcgcatcgccacgctctatcgcctg
ccgacggtgacgcgcggcgtgctggtggtgccggtggccacgctgatgcaaaggctcgcg
ccgcgcagccacatcaccagcggcctggtggtcaggcgtggccagcgcatggacctggcg
accgagcgccgccggctggaggcggccggttaccgcaacgtgccgcaggtcggtgatccg
ggcgaatacgccgtgcgcggcgcgctgatcgacatctttccgatgggcgcggccgagccc
taccgcatcgagctgttcgacgacgaggtcgactcgatccggagcttcgacccggaaagc
cagcgctcacagcatccggtcgacgcggtggaactgctgcccgggcgcgaattcccgctc
accgaggaggcggtgcgcgacttccgcaaccgcctgcgcgagcgcttcccgatcgacgtg
cgccgctgcccgctctatcaggacatgaaggaaggcgtgacgccgggcggcatcgagtac
tacctgccgctgttcttcgacgagccccgccaggacggacacgacgcggcgtccgacccg
cacgcccacggcaccgcgacgctgttcgattacctcgccgaggatgcgctgttcgtcctc
ggcgaaggggcgctggaggccgccgagcagttctgggcccagaccggcgagcgctatgcg
cagcgcgcccacgacatcgagcgtccggtgctgccgccggccgagctctatctgccgccc
gaacgcctgcgcgaacaactcaaccgcaagccgcgggtggagatcgtcgccgcaggccac
ccgcatgcgctcgataccggcaccgaggccgcgccggaactgccgctcaaccgcaagggc
gaggccgccggtgcttcactgcgccgttttctgaccgactatgccggccgcgtgctgatc
gccgccgattcggccggccgtcgcgaggcgctgctcgaaaccctggccgaagccggattg
aaaccggccgcggtcgagcactgggcggcgttcctggccggcgacgcaccgctcgccatc
accgtcgccccgctggagcagggcttcgccctgcgccgacccgcgctcaccgtgctcacc
gaacgcgagctctacggcgagcgcgtgcgtaccgagcggcggcgccggcgcggcgcggcg
cgtgatccggaagcggtcatccgcgatctgaccgagctttccatcggtgcgcccatcgtc
cacgtcgaccacggcgtgggccgctaccagggcctggtgacgatggagctcggcggcatg
gaaggcgagttcctggtcatcgaatacgccaagggcgacaagctctacgtgccggtggcg
cagctcggcctggtcagccgctattcgggcaccgcgccggaactggcgccgctgcactca
ctcggcggcgacgcctgggaacgcgcgcgacgcaaggcggcggaaaaggcccgcgacgtc
gccgccgaattgcttgccatctacgcccagcgcgaggcgcgcggcggtcaggcactggcg
atcgaccgcccgctggtcgaggccttcggcgccggttttccgttcgaggaaacccccgac
cagcagcaggccatcgacgccgtgctggcggatcttgccgcgccgcgcgcgatggaccgg
gtgatctgcggcgacgtcggcttcggcaagaccgaggtcgccctgcgcgccgccttcgcc
gtcgccaccgccggcaagcaggtggccgtgctggtgccgaccaccctgctcgcccagcag
cattaccgcaccttcgccgaccgcttcgccgactggccggtgaaggtggacgtgctctcg
cgcttcaagtcgaccaaggaagtgaacgacgcgctcaagcgcctggccgccggcgacatc
gacgtcatcatcggcacccacaagctcttgcagccggaggtcaagttcaaggatctgggc
ctggtcatcgtggacgaggaacagcgtttcggcgtgcgccagaaggaacaactgaagaaa
ctgcgcgccgaggtggacctgctcaccatgaccgcgacgccgatcccgcgcacgctcaac
atggccatgggcggcctgcgcgacctctcgctgatcaccacgccgcccgcgcaccgcatg
gccgtgcgcaccttcatctcgacctgggaaccggcgctgatccgcgaggccttccagcgc
gagctcgcccgcggcggccaggtgtatttcctgcacaacgaggtcgactcgatcgagcgc
accgcgcgcgaactgggcgaactcatccccgaggcgcgcatcggcatcgcccacggccag
atgcccgaacgcgagctcgaacgcgtgatggccgacttccaccgccagcgcttcaacgtg
ctggtgtgcaccaccatcatcgagaccggcatcgacatcccgaccgccaacaccatcatc
atcgaccgcgccgaccgtttcggtctggcccaattgcaccagttgcgcggacgcgtgggc
cgctcgcaccatcgcgcctatgcgtacctgatcgtgcccgaccgcaaggcgatgaccgcc
gacgcggaaaaacgcctggaggccatcgcctcgctggaggaactgggcgccggcttcacc
ctcgccacccatgacctcgaaatccgcggcgccggcgaactgctgggcgatgagcaatcc
gggcagatccaggagatcggtttcggcctctacaccgagctgctggatcgcgccgtgcgc
gcgctcaagagcggcaaggtgcccgatttcgacctttccagcgaacacgaaaccgaggtg
gaactgcacctgccggccctgattccggacgattacctgcccgacgtgcacacgcgcctg
accctgtacaagcgcatcgccagcgcgcgcgacggggaagccctgcgcgaactgcaggtg
gaaatgatcgaccgcttcggcctgctgcccgaaccgaccaagaccctgttcgcggtcgcc
gcgctgaaactcgccgccacgccgctcggcatccgcaaactcgatttcggtcccaacggc
gggcgcatcaccttccgcgaaaaacccgacatcgacccgatggcgatcatccggctgatc
cagagccagccacgcgtctacaaactggacggccaggacaaactgcgcatcaccctcgac
ctgcccggcgccgccgaacgcctgcgtgcggcgcaggacgtgctggtgcaactcggcgcg
cgccggcccctctga
DBGET
integrated database retrieval system
