KEGG   Aerosticca soli: ALSL_1249
Entry
ALSL_1249         CDS       T06043                                 
Name
(GenBank) ATP-dependent DNA ligase clustered with Ku protein, LigD
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
rbd  Aerosticca soli
Pathway
rbd03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:rbd00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    ALSL_1249
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:rbd03400]
    ALSL_1249
Enzymes [BR:rbd01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     ALSL_1249
DNA repair and recombination proteins [BR:rbd03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     ALSL_1249
SSDB
Motif
Pfam: LigD_N DNA_ligase_A_C DNA_ligase_A_M Cas3_C FCP1_C
Other DBs
NCBI-ProteinID: BBD79907
UniProt: A0A2Z6E4L8
LinkDB
Position
complement(1326505..1328133)
AA seq 542 aa
MSLREYRRKRHFDQTPEPAGKVAARRHRDPIFVIQLHHASHRHYDFRLELDGVLKSWAVP
KGPSLRPGEKRLAVQVEDHPLDYATFEGDIPAGHYGAGHVAIFDHGTWHCEGDPHRQLAE
GKLVFTLDGEKLHGEWALVRTAMRGRQPQWLLIKHDDAYAADMEADDFLDEDATDERKST
AKRPTKRTAKHAAAAPPTRRAATKRARKSTATDWQASARALPGARAGMPFGFAPALTMLR
PAPPSGEDWLHEIKWDGYRLLVDLENGKARLRSRADLDWTATFPEVARAIEALPVADACL
DGELVALDDAGRSDFPALQHAIEQRATADLRYMLFDLPGLAGMDLRGCPLHERKRLLAEL
VAAAGEGPLGYSEHLVGHGQELFAETRRQGLEGVVSKRIDSTYRSGRSGDWLKAKHAHTD
EFVIVGYTPPKGSRTGFGSLLLAARDEKGGWRYVGRVGTGFDQATLDSLQRRLEALARKT
PTVALPAKLPFPTRSVQWVTPRLVAEVDFRGWTRDRLLRQASFLRLREDKPADQLEPPEE
IG
NT seq 1629 nt   +upstreamnt  +downstreamnt
atgagcctgcgcgagtaccggcgcaagcggcatttcgaccagacgcccgaacctgcgggc
aaggtggctgcgcgccggcaccgcgacccgatcttcgtgatccagctgcatcatgccagc
caccggcattacgacttccgcctggaactggacggcgtgctcaagagctgggcggtgccg
aaggggccttcgctgcggcccggcgagaaacgcctggccgtgcaggtggaggatcacccc
ctcgactacgccactttcgaaggcgacataccggccggccattacggcgccggtcacgtg
gcgatcttcgaccacggcacctggcattgcgaaggcgatccgcaccggcagctggccgag
ggcaagctggtcttcaccctcgatggcgaaaaactgcacggcgaatgggcgctggtgcgc
accgccatgcgtggacgccagccgcaatggctgctgatcaagcacgacgacgcctacgcc
gcggacatggaggcggacgacttcctcgacgaggacgctaccgacgagcgcaagtcgacc
gcgaaacgccccacgaagcgcacggccaagcacgccgcagcggctccgccgacccgccgc
gccgccaccaagcgcgcacgcaaatcgaccgccaccgattggcaggccagcgcacgagca
ctgcccggcgcgcgtgcgggcatgccgttcggtttcgctcccgcgctgaccatgctgcgg
ccggccccgccgagcggcgaagactggctgcacgagatcaagtgggacggctatcgcctg
ctggtcgacctcgaaaacggcaaggccaggctgcgttcgcgcgctgacctcgactggacc
gccacctttcccgaagtcgcccgcgcgatcgaggcgctgccggtcgccgacgcctgcctg
gacggcgagctggtcgccttggacgatgcggggcgcagcgattttcccgccctgcagcac
gccatcgaacagcgcgccacagccgatctgcgctacatgctgttcgacctgccgggactg
gccggcatggacctgcggggctgcccgttgcacgagcgcaagcgcctcctggccgagctt
gtcgcagccgccggcgaagggcctctcggctacagcgagcacctcgtcggccatggccag
gagctgtttgccgaaacccgccggcagggcctggaaggggtggtcagcaaacgcatcgac
agcacctaccgcagcggccgcagtggcgactggctcaaggccaaacacgcgcacaccgac
gaattcgtcatcgtcggctacacgccgccgaagggctcgcgcaccggtttcggctcgctg
ctgctggccgcgcgtgacgagaaaggcggctggcgctatgtcggccgggtcggcaccggc
ttcgaccaggccacgctcgacagcctgcagcgccggctcgaggcgctcgcgcgcaagacg
ccgacggtcgcgctgccggccaagctgcccttcccgacgcgcagcgtgcaatgggtgacc
ccgcgcctggtggcggaggtggacttccgcggctggacgcgcgaccggctgctgcgccag
gcgagctttctgcgcctgcgcgaggacaaacccgccgaccagctcgaaccccccgaggaa
atcggctga

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