Aerosticca soli: ALSL_2627
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Entry
ALSL_2627 CDS
T06043
Name
(GenBank) ATP-dependent RNA helicase RhlB
KO
K03732
ATP-dependent RNA helicase RhlB [EC:
5.6.2.7
]
Organism
rbd
Aerosticca soli
Pathway
rbd03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rbd00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ALSL_2627
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rbd03019
]
ALSL_2627
Enzymes [BR:
rbd01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
ALSL_2627
Messenger RNA biogenesis [BR:
rbd03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
ALSL_2627
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
ERCC3_RAD25_C
Motif
Other DBs
NCBI-ProteinID:
BBD81251
UniProt:
A0A2Z6E8U6
LinkDB
All DBs
Position
complement(2793343..2794977)
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AA seq
544 aa
AA seq
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MSQTVLTDTYFRQFDLHPSLQQGLDEAGFVRCTPIQALTLPVALAGRDVAGQAQTGTGKT
CAFLVALMNRLLTRPAAPDRKDGDPRALVIAPTRELAIQIDKDARSIGRHTGLKIALIYG
GVDYDKQRQQLREGCDIVIATPGRLLDYYKQHVFGLDSVEVMVVDEADRMFDLGFIKDVR
YIFRRLPPRERRQVLLFSATLSHRVLELAYEHMHEAEKLVVETDNVTADRVRQRVYFPAK
EEKLPLLLNLIERERPARSIVFVNTKMAAERVTERLKKQGHRVGALSGDVPQLKRQKLLQ
RFQDGQLDILVCTDVAARGLHIPAVSHVFNYDLPQDAEDYVHRIGRTARLGAEGDAISFA
CDLYAMSLPEIEAYIGQKIPVATIEPELLVMPKPREMDAAFAADTAADSAAFGDKVAPRT
PAGRPGPRPRPRKNIADAPRPTPATAETAAPAPAPAPAGEDGPARKRRRRGGRGRRRPEA
ETPAVQAAQGPARPAREERRPPPAEPAAAKPAQRPSRQVAATAPRPAAKKPGFFRRLARL
FTGR
NT seq
1635 nt
NT seq
+upstream
nt +downstream
nt
atgtcccagaccgtactcaccgatacctatttccgccagttcgaccttcacccctccctg
cagcagggactcgacgaagccggtttcgtccgctgcacgccgatccaggcgctgacgctg
ccagtcgccctcgccggccgcgacgtcgccggccaggcgcagaccggcaccggcaagacc
tgcgccttcctggttgcgctgatgaaccgcctgctcacccggcccgccgcgcccgaccgc
aaggacggcgatccgcgcgcgctggtgatcgcgccgacccgcgagctggcgatccagatc
gacaaggacgcgcgcagcatcggccgccacaccggcctcaagatcgcgctgatctacggc
ggcgtcgactacgacaagcagcgccagcagctgcgcgagggctgcgacatcgtcatcgcc
acgccgggccggctgctggactactacaagcagcacgtgttcggcctcgacagcgtcgag
gtgatggtggtcgacgaggccgaccgcatgttcgacctcggcttcatcaaggacgtgcgc
tacatcttccgccggctgccgccgcgcgagcgccgccaggtgctgctgttctcggccacg
ctcagccaccgcgtgctggagctcgcctacgagcacatgcacgaggccgagaagctggtg
gtggagaccgacaacgtcaccgccgaccgggtgcgccagcgggtctatttcccggccaag
gaagagaagctgccgctgctgctcaacctgatcgaacgcgaacggccggcgcgcagcatc
gtcttcgtcaacaccaagatggccgccgagcgtgtcaccgagcggctgaagaagcagggc
caccgcgtcggcgcgctgtccggcgacgtgccgcagctcaagcgccagaagctgctgcag
cgtttccaggacggccagctcgacatcctggtctgcaccgacgtcgccgcgcgtggcctg
cacatcccggcggtcagccacgtgttcaactacgacctgccgcaggatgccgaggactac
gtgcatcgcatcggccgcaccgcgcggctgggcgccgagggcgacgcgatcagcttcgcc
tgcgatctctacgccatgagcctgccggagatcgaggcctacatcgggcagaagatcccg
gtggcgacgatcgaacccgagctgttggtgatgccgaagccgcgcgagatggatgccgcg
ttcgccgccgacacggccgccgacagcgcggccttcggcgacaaggtggcgccacgcacg
ccggcgggccggcccgggccgcgtccgcggcctcgcaagaacatcgccgatgcgccgcgc
ccgacgccggccacggccgagacggcggcgcccgcaccggcgcccgcaccggcgggcgag
gacggacccgcgcgcaagcgtcgtcggcgcggcgggcgcggccgtcggcgtccggaagcg
gagacccccgcggtccaggccgcccagggtccggccaggccggcccgcgaggagcggcgt
ccgcctccggccgaaccggccgcggccaagcccgcgcaacgtccgtcgcgccaagtggcg
gcgaccgcgccgaggcctgcggccaagaagccggggttcttccggcggctggcccggctc
ttcaccgggcgctga
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