Roseinatronobacter bogoriensis subsp. barguzinensis: BG454_08740
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Entry
BG454_08740 CDS
T05218
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
rbg
Roseinatronobacter bogoriensis subsp. barguzinensis
Pathway
rbg03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rbg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BG454_08740
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rbg03019
]
BG454_08740
Enzymes [BR:
rbg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
BG454_08740
Messenger RNA biogenesis [BR:
rbg03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
BG454_08740
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
AAA_22
Motif
Other DBs
NCBI-ProteinID:
ATX65905
UniProt:
A0A2K8KDV0
LinkDB
All DBs
Position
complement(1830464..1831753)
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AA seq
429 aa
AA seq
DB search
MFGLRPVLMTGLEAQGFGTPTPIQARAIPVIMQGRDLLGLAQTGTGKTLAFGLPVMHALL
GAGRPEPKTTQALILAPTRELVNQIAETLNSFAQKTPLKVQRVVGGAGIGPQIQKLAKGC
DILVATPGRLLDLLDRRALSLNATQMLVLDEADQMLDLGFIHALRKIAALLPKERQTLMF
SATMNKQMNEIADAYLDRPERIQVAAPGKPADKIDQSVHFVPQGDKARVLEGYLKQHPDD
LALVFSRTKHGAEKLMKLLNGWGIPAGSIHGNKSQGQRERTLQGFREGKIKVLVATDVAA
RGIDIPDMRHVYNFDLPEVPENYVHRIGRTARAGASGRALAFCAPAEMGDLRAIERLMKI
TLAVAGGAPWSDELAGPARTAARKRNGGGQRPARHGDSDGHARKPRQKSFGKRQGPAKSG
GRDGQRRSA
NT seq
1290 nt
NT seq
+upstream
nt +downstream
nt
atgttcgggctgcgcccggtgctgatgacgggccttgaagcccaaggttttggcaccccc
accccgattcaggcccgcgcgatcccggtgatcatgcagggccgtgacctgctagggctt
gcgcagaccggcacgggcaagacgctggcttttggcctgcctgtcatgcatgccctgctt
ggcgctggccgccctgaacccaaaaccacacaggcgctgatccttgcgccaacgcgcgaa
ctggtgaaccagatcgccgaaacactgaacagttttgcccagaaaacaccgctgaaagtg
cagcgcgttgtcggtggcgcgggcattggcccccaaatccagaaactggccaagggctgt
gatattctggttgccacaccgggccgcttgctggacctgctggaccggcgcgccttgtcg
ctgaatgccacacagatgctggttctggacgaagccgaccagatgctggatcttggcttt
atccatgcgctgcgcaagattgcagccttgctgccgaaagaacgccagacactgatgttc
tcggcaacgatgaacaagcagatgaacgagattgctgatgcttatctggaccggcccgaa
cgcattcaggtcgcagcacccggaaaaccggcagacaagatcgaccagtcggtgcatttc
gtgccgcaaggcgacaaggcccgcgttcttgaaggctatctcaaacagcacccagatgat
ctggcgctggtcttttcgcgcaccaaacacggggccgagaagcttatgaaactgctcaat
ggctggggcattcccgcaggctctatccacggcaacaagtcacagggccagcgcgagcgg
accttgcagggcttccgtgaaggcaagatcaaggtgctggttgcaaccgatgtggccgca
cgcgggatcgatattccagacatgcgccatgtctataacttcgatctgcccgaagtgccc
gaaaactacgtgcaccgcatcggccgcacggcgcgggccggggcatccggtcgcgcgctt
gcattttgtgcacctgcggaaatgggcgatctgcgcgcgattgagcggctgatgaaaatc
acactggccgttgcaggcggcgcgccttggtcagacgagcttgcaggcccggcccgcaca
gccgcgcgcaagcgcaatggcggcggccaacgtccggcccgtcatggtgacagcgacggg
cacgcccgcaagccgcggcagaaaagctttggcaagcggcaagggccagccaagtccggt
ggccgcgacggccagcgtcggtcagcataa
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