Roseinatronobacter bogoriensis subsp. barguzinensis: BG454_09780
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Entry
BG454_09780 CDS
T05218
Name
(GenBank) ribonuclease
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
rbg
Roseinatronobacter bogoriensis subsp. barguzinensis
Pathway
rbg03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rbg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BG454_09780
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rbg03019
]
BG454_09780
03009 Ribosome biogenesis [BR:
rbg03009
]
BG454_09780
Enzymes [BR:
rbg01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
BG454_09780
Messenger RNA biogenesis [BR:
rbg03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
BG454_09780
Ribosome biogenesis [BR:
rbg03009
]
Prokaryotic type
rRNA processing factors
BG454_09780
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
DnaJ_CXXCXGXG
Motif
Other DBs
NCBI-ProteinID:
ATX67808
UniProt:
A0A2K8KL01
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All DBs
Position
2043039..2045870
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AA seq
943 aa
AA seq
DB search
MAQKMLIDATHAEETRVVVVDGTKVEEFDFETASRRQLAGNIYLAKVTRVEPSLQAAFVD
YGGNRHGFLAFNEIHPDYYQIPAADRAALLEEERALADDAEEEDNSDAAPKGRRGVQRSS
NRRNSGAKAERAKAADQVETREVSGMDIVDLEGDEDALLDDGNDAAPTPEAEQEVAAPES
EPTDKADTEAKQPEADQEEPYRAADHATEIDDRIEAISDGDVTEEVRPRRKPRMRRYKIQ
EVIKVRQIMLVQVVKEERGNKGAALTTYLSLAGRYCVLMPNTARGGGISRKITNAADRQK
LKAIANEILVPEGAGLIIRTAGANRTKAEIKRDYEYLLRLWEQIRDLTLKSIAPTPIYAE
GDLIKRTIRDLYNKNIDEVLVEGEAGYRVAKDFMKMIMPSHAKNVKLYQDQMPLFARYQV
ESYLAAMFNPTVQLPSGGYIVIGITEALVAIDINSGRATREGSIEETALKTNMEAAAEIA
RQLRLRDLAGLIVIDFIDMEERKNNAAVEKMLKDKLKHDRARIQVGRISGFGLLEMSRQR
LRPGMLEATTQPCPHCHGTGLIRSDDSMGLTVLRQIEEEGTRGRSREVLVRAPAAVVNFI
INFKREHLAQIEARYGMAVRLEADPHMISPDFEIEKFKTATRVPTPQADVVSINTTLMPE
LEEEEDQVEEKGADSRAEDTAEADNQPRKKRRRRRRRRGGGQNGADDADGGQDASSDADS
ADSTSEAETAPAAAEDQSSDKAEVEAAETPSAKPKRATRSRSKKAAVKAEPVDQEGTEGA
TPAAAEDVIAAAAPEAETEAPPAKPKRTRRKPAAKKKDGKAEATAVPEAEASEPATPVDA
APEIAPEISAADQPAAQAVSAAAQETAPDLSDADAVPADSLAPTAVDDADKGTVAAVPDT
TSAQEAPEPLSEPAAETQEAERPEQEAPAKPEKKRRGWWSVRG
NT seq
2832 nt
NT seq
+upstream
nt +downstream
nt
atggctcagaaaatgctgatagatgccacccacgcggaagaaacccgcgttgtggtggtc
gatggaaccaaggtcgaggaatttgatttcgaaaccgccagcaggcgacagcttgcaggc
aatatctaccttgccaaagtaacgcgggttgaaccctcgctgcaagcggccttcgtggat
tacggcggcaatcgccacgggtttcttgccttcaacgaaatccaccccgattattaccag
atccccgctgccgatcgtgctgcacttctggaagaagagcgcgcactcgcagatgatgcg
gaggaggaggacaactccgacgccgcaccaaaggggcgcaggggcgtacagcgcagttca
aacaggcgcaattcgggcgcgaaggcagagcgtgcgaaggcggccgatcaggtggaaaca
cgcgaagtatccggtatggatatcgttgatctggaaggcgacgaagacgccttgcttgac
gacgggaatgatgcggcgccaacacccgaagctgagcaggaggtcgccgcaccagaatcc
gagccgactgacaaggcagatacagaggcgaaacagcctgaggcagatcaggaagagccg
tatcgcgccgctgatcatgcgacagagatagatgaccggatcgaagcgatctcggacggg
gatgttacggaagaggtacgcccccgccgcaagccgcgcatgcgccgctataagattcag
gaagttatcaaggtgcgccagatcatgctggtgcaggtggtcaaggaagaacgcggcaac
aagggggccgcgctgacaacttatctgtcactggcaggtcgctattgcgttctgatgccc
aacacggcgcgcggcggcgggatcagtcgcaagatcacaaatgccgctgaccgccagaag
ctgaaggccattgcaaatgaaatccttgtgcctgaaggggcagggctgatcattcggacc
gcaggcgcaaaccgcaccaaggccgagatcaagcgcgattatgaatacctgctgcgcctg
tgggaacagatccgcgatctgacgctgaaatccatcgcgccaaccccgatctatgcggaa
ggtgacctgatcaagcgcacgatccgcgatctgtataacaagaatatcgatgaggttctg
gtcgagggcgaggcaggctaccgcgtggccaaagacttcatgaaaatgatcatgccgtcc
catgccaagaacgtgaagctgtatcaggaccagatgccgcttttcgcgcgctatcaggtt
gaaagctatcttgcggccatgttcaacccgacagtgcagcttccctcgggcggctatatc
gtgatcggaatcactgaggcgttggtcgcgatcgacatcaactccggtcgtgccacccgc
gaaggctcgatcgaggagacggcgctcaagaccaatatggaagccgcagccgagattgcg
cgccagttgcgcctgcgcgatctggcagggctgatcgtcattgacttcatcgacatggaa
gagcgcaagaataacgcagctgtcgaaaagatgctcaaggacaagctcaagcatgaccgt
gcgcgcattcaggtgggccgcatttccggctttggcttgctggaaatgtcccgccagcgt
ctgcgccccggcatgttggaagccacaacgcagccttgcccgcattgccacggcaccggg
ttgatccggtctgatgacagcatgggcctgacggttctgcgccagattgaggaagagggc
acacgtggccggtcgcgcgaagtactggtgcgcgcgcctgcggcggtggtgaatttcatc
atcaatttcaagcgcgagcatctggcacagatcgaggcacgctacggaatggccgttcgg
ctggaagccgatccgcatatgatcagccctgatttcgagatcgagaaattcaagacagcg
acacgcgtgccgacgccgcaggccgatgtcgtttcgattaacacgacactgatgccagag
cttgaagaagaagaggatcaggtcgaggaaaaaggcgccgacagccgggctgaagacact
gctgaagcggataaccaaccgcgcaagaagcgtcggcgtcggcggcgtcggcgcggtggt
ggccagaacggcgcggatgacgcagatggcgggcaggacgcctccagcgatgctgatagc
gcggactccacatctgaagcagaaactgcgccagcagcggccgaggatcagtccagtgat
aaggcagaggtcgaagctgcagaaaccccgtctgccaagccaaagcgcgccacgcgcagc
cggtccaaaaaggccgcggttaaggcggagcctgtagatcaggaggggaccgagggcgca
acaccagcagccgcagaagacgtgattgctgccgctgcgcccgaggctgaaaccgaggca
ccgcctgccaagcccaagcggacgcgccgcaagcctgctgccaagaagaaagatggaaaa
gcagaggcgacagccgtacctgaagccgaggcatctgaacccgcgacacctgttgacgcg
gcaccggaaatcgcgccggaaatcagcgcggctgatcagcccgccgcgcaagctgtgtct
gcggctgcgcaggaaacagcgccggacttatcggatgcagacgcagtgccagcagacagt
ctggcaccaactgctgtcgatgatgcggacaaaggaactgtcgccgcagtgccggacacg
accagcgcacaggaggcccctgagccattgagcgagcctgcagcggaaacgcaggaggca
gagcgccctgagcaagaggcgcccgccaaaccagaaaagaaacgcaggggctggtggtcc
gtgcgtgggtaa
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