Roseinatronobacter bogoriensis subsp. barguzinensis: BG454_11270
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Entry
BG454_11270 CDS
T05218
Name
(GenBank) ribonuclease J
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
rbg
Roseinatronobacter bogoriensis subsp. barguzinensis
Pathway
rbg03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rbg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BG454_11270
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rbg03019
]
BG454_11270
Messenger RNA biogenesis [BR:
rbg03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
BG454_11270
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
Lactamase_B
Lactamase_B_2
RMMBL
Anti-Pycsar_Apyc1
Lactamase_B_6
YhzD
Motif
Other DBs
NCBI-ProteinID:
ATX66319
UniProt:
A0A2K8KA38
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Position
complement(2352785..2354458)
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AA seq
557 aa
AA seq
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MSKDRLIYIPLGGAGEVGMNAYVFGYGPKGRERLILVDLGVTFADMDSSPGVDLILPDIT
WLEERRDRLEAIIITHAHEDHVGAVGLLWDKLQVPVYARDFTARIARLKMQDAGQDPQQV
ITVGKAPEALELGPFRVQFFPVAHSLPEAAGLIIDTPAGRIVHSGDFKADETPGVGEPHD
PVLLAEIGRTGVKALFCDSTNVMNENPGRSEATLNAPIAQLMRDAKGMVVATTFASNVAR
LKTLAVAAQEAGRSVCLMGRAMLRMTQVAKEAGILTDFPDTVSPEEAKSIPRENLLLIVT
GSQGERRAASAQLARGNYMGLSMKEGDTFLFSSMTIPGNERDVGRVVNALSEMGVDVLDN
AARLYHVSGHANRPDLVAMHDLIAPKMLIPIHGEHRMMREHAKLALSRGMRSAVVPNGSV
LDLTDDVPGLVDEVPTGRVYLDGSRLIGAMDGIIRDRIRMAIGGHVFVTLILDEENEALG
APWAEIAGLRAEARGGKLLNEVIEAELDEFVARAGHKVLADDDKLNDGLRRVVRQVVMEE
IGKKPEVTIVVSRMMND
NT seq
1674 nt
NT seq
+upstream
nt +downstream
nt
atgagcaaggacaggctgatctacattccccttgggggcgcaggtgaagtgggcatgaac
gcttatgtgttcggttatggcccaaaggggcgcgagcgcctgatccttgtggaccttggg
gtgacatttgcggatatggattccagccccggtgtcgatctgatcttgcccgatatcaca
tggttggaagaacgtcgtgacaggctggaagcgatcattattacccatgcgcacgaagat
catgtcggtgcggtggggctgctatgggacaagttgcaggttccggtttatgcgcgggat
ttcaccgcccgcattgcccggctgaaaatgcaggatgccggacaggacccgcaacaggtg
attaccgtgggcaaggcccccgaagctctggagcttggcccctttcgcgtgcagtttttc
ccggttgcccattccttgcccgaagccgctgggctgatcatcgatacgccggcgggacgg
attgtgcattcaggtgatttcaaggcagatgaaacccccggtgtcggtgaaccgcatgac
ccggtattgctggccgagatcgggcgtacaggggtcaaggcgctgttttgtgacagcacc
aatgtgatgaacgaaaatccgggccggtctgaagccacattgaatgccccgattgcacaa
ttgatgcgcgatgcgaaaggcatggttgttgcgacgaccttcgcgtcgaatgttgcgcgc
ctgaaaacgctggcggttgccgcgcaagaggcgggccgctctgtctgtctgatggggcgc
gcaatgctgcgcatgacacaagttgctaaagaggccggaattctgaccgatttccccgat
accgtcagccccgaagaggcaaagtccatcccgcgcgagaacctgctgctgatcgttacg
ggatcgcaaggggaacggcgcgcggcctcggcgcaactggcgcggggcaattacatggga
ctgagcatgaaagagggggatacattcctgttctcctctatgacgatcccgggcaatgag
cgtgacgtgggccgtgtggtcaatgcactgtccgaaatgggcgttgatgtgctggacaat
gccgcgcggctttatcatgtctctggccatgccaatcggcctgatcttgttgcgatgcat
gaccttattgcaccgaaaatgctgatcccgattcacggtgaacaccgcatgatgcgcgaa
catgccaaactggcgctgtcgcgcgggatgcggtcggccgtagtgcccaacgggtctgtg
ctggacctgacggatgatgtgccggggctggtggatgaggtgccgaccgggcgcgtctat
ctggatggcagtcgcctgatcggggcgatggacgggattatccgcgaccgcattcgtatg
gcgattgggggacatgtttttgtcacattgatcctcgatgaagaaaatgaggcgcttggt
gcgccctgggcagaaatcgcagggctgcgcgctgaggcacgggggggcaagctgctgaat
gaagtcattgaggccgaactcgacgaatttgtcgcacgagcaggccataaggtgctggca
gatgatgacaagctgaacgacgggctgcgccgggtcgtgcgccaagtggtcatggaagag
attggcaagaagcctgaagtgaccatagtcgtcagccgcatgatgaatgactga
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