Rhodocyclaceae bacterium Thauera-like: B4966_00110
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Entry
B4966_00110 CDS
T05394
Name
(GenBank) exodeoxyribonuclease V subunit gamma
KO
K03583
exodeoxyribonuclease V gamma subunit [EC:
3.1.11.5
]
Organism
rbh
Rhodocyclaceae bacterium Thauera-like
Pathway
rbh03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
rbh00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
B4966_00110
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rbh03400
]
B4966_00110
Enzymes [BR:
rbh01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
B4966_00110
DNA repair and recombination proteins [BR:
rbh03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
B4966_00110
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Exonuc_V_gamma
RecC_C
Motif
Other DBs
NCBI-ProteinID:
AUL98748
UniProt:
A0A2K9LB82
LinkDB
All DBs
Position
complement(27918..31280)
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AA seq
1120 aa
AA seq
DB search
MFAVAFSNRFETLLELLLARLAAERPGPFGRRELVVPNSAIRRRIELAVAEREGVAAQLQ
FDFLAQWLWQQIGRVVPDVGARSPYAPALLAWRIFGLLSEGGADHWVAAHPRLAAYLAAA
DARMRYELAERIARVFDHYLTYRPQWLAAWIDGRSALERCASTAEQRADEAWQAELWRRI
QAAMPQRREHPAAAFLRALTAMDETELAALGLPRCVHVVALPALPPLYLDVLRELARVVD
VQLYTLNPCQEYWFDVVDPRRLSWLATRQRDLFVDTGNRLLAAWGRQTQAHIDLLFEGEH
PVEEEALFIAHPADHLLARVHNAILNLTELQPGSVVLNDADRSIEVHVCHSRTRELEVLH
DRLLGLFAADPTLRPDDILVLTPELDTTAPLIEAVFGTAPAARRIPWRITGLAATRENPI
AQVLDALLALVASRYPASRVFDLLQQPPVAARFGLDLEALETAHQWLHEAGFRWGLRAED
GLHTPAYTLEEGLHRLFLAWAAGEAASAAPFAGRIGAGWPEGSEGQLLGRLWRYAEVLRL
LREQLLRPQQAADWQRSLNAALDHLVADDARWAEALHEVRAAIAGLVEDIGAAGLTAALP
LDVVRPALAARLDDPARGGVPGGAVTFSAMAALRGLPYRVVAIVGLDRDVFPGNDRTAEF
DLMAAFPAKGDRQRRVDDRNLFLDLLLAARDVLHLSYTGRSVRDGAELPPSVLVDELLDV
LAEACASDPADPAALAAARSRLTVVHPLQPFSADYFLPDAARDRRLVSYHEDYATALAAR
LGALSAPARLALPAVGADEDEAPSDEHSAAEAPAAPFFTAPLPAPDAAWRTLTLTQLIRF
YRNPSRYLLRERLGVDLPESKEPLADVEPFVPDWPARQALAARLLPVLMETELTAEALLA
LAQAGAEYPAGALGEDALRAELTALQTYTARLRAATPGACLPAHESRLAHTLEGESWELR
TAFTDLRPGGRVYARFDDTRAGDYLAAWLAHLALCAQPPDGVECVTRGVSRDGDFVLLTV
PAEEARTRLAELIAYYRAGLMRPLHFYPKSAWAYVEGGQNIGAAQRTWHGGRHTAFGEAS
DPAYRLALRGLAEPLDEEFYALAETVFAPMMTYLEDARRA
NT seq
3363 nt
NT seq
+upstream
nt +downstream
nt
atgtttgccgttgccttctccaaccgcttcgagaccctgctcgaactattgctcgcccgt
ctagccgccgagcgtcccggcccttttggccggcgcgagctggtggtgcccaacagcgcc
attcgtcggcgtatcgaactggcggtggccgagcgcgaaggggtggccgcccagctgcaa
ttcgacttccttgcgcaatggctgtggcagcagatcggccgtgtggtgcccgatgtcggg
gcgcgctcgccgtacgcgccggcgctgctcgcgtggcggattttcggcctgttgagcgaa
gggggcgcggaccactgggtggcggcgcatccgcgcctggccgcttatctggccgcagcc
gatgcccgcatgcgctatgagttggccgaacgtatcgcgcgggtgttcgatcattacctt
acttaccggccgcagtggctagccgcctggatcgacgggcgcagcgctctggagcgctgt
gcgagcactgccgaacagcgtgccgacgaagcctggcaggccgagttgtggcgtcgcatt
caggcggccatgccgcagcgccgtgagcatcccgcggccgccttcctgcgcgccctcacg
gcgatggacgaaaccgaactggccgctttgggcctgccgcgttgcgtgcatgtggtggct
ctgccagccttgccgccgctctatctcgatgtgctgcgcgagcttgcccgtgtggtggat
gtgcagctttatacgctgaacccgtgccaagaatactggtttgacgtggtggatccgcgc
cgcctgtcctggcttgccactcgccagcgcgatctgttcgtcgataccggtaaccgtttg
ctggccgcctgggggcggcagacccaggcgcatatcgacctgctgttcgagggcgagcac
ccggtcgaagaagaagcgttattcattgcccaccctgcggaccatctgctggcgcgggtg
cacaacgccattttgaatctcaccgaacttcaaccgggcagcgtggtgctgaacgatgcg
gatcgcagcatcgaggtacacgtgtgccattcccgcacccgtgagctggaggtgttgcac
gaccgcctgctcggcctgttcgccgccgatcccacgctgcgtccggacgatatcctggtg
ctcacgcccgaactcgataccaccgcgccgctgatcgaggcggtgttcggcacggcgccg
gcagcccgtcgcattccgtggcggatcaccggtttggctgcgacccgcgaaaacccgatc
gcacaggtgctcgacgcgctgcttgcgctggtggccagccgctatccagccagccgggtg
tttgatttgctgcagcagccgccggtggcggcgcgtttcggtcttgacctggaggcattg
gaaacggcgcatcagtggctgcacgaagccggctttcgttgggggttgcgcgccgaggat
gggttgcatacccccgcctacaccctggaagaggggctgcatcgtctttttctggcctgg
gcggcgggcgaggcggccagcgccgcgccttttgccggccggatcggggcgggctggccg
gaaggcagcgaaggccagctgctcgggcgcttgtggcgctatgccgaagtcttgcgcctg
ctgcgtgagcagctgctgcgcccgcagcaggcggcggattggcagcgcagtctcaacgct
gcactcgatcacctggtggccgatgatgcccgatgggcggaggcattgcacgaggttcgc
gccgccattgcggggctggtcgaagacatcggtgccgccggactgactgcggcgctgccg
ctggatgtggtgcgtccggcactggccgcgcgcttggacgacccggcacgtggcggcgtg
cccggcggtgcggtcaccttctcggcgatggcggcgctacgcggcttgccttaccgggtg
gtggccatcgtcggcctggaccgcgacgtctttcccggcaacgaccgtacggcggaattc
gacctgatggcggcttttccggccaaaggcgatcgccagcgccgtgtggatgatcgcaat
ctgttcctcgacctgctgctggccgcgcgcgatgtgctgcacttgtcttacaccggccgc
agtgtgcgtgacggggccgaattgcccccgtcggtattggtcgatgaactgctcgatgtg
ctcgccgaagcctgcgccagcgacccggccgatcccgccgcgctcgccgccgcccgcagc
cgtctcaccgtggtgcatcccctgcagcctttttcggccgactactttctgccggacgca
gcgcgggatcgtcgccttgtgagctaccacgaagactacgccacagcgctggccgcgcgt
ctgggcgcgctcagtgcgccggcacgactggctttgcccgcggtgggtgcggatgaggat
gaagcgccgagcgacgagcatagtgcggccgaagcgcccgccgcgccgtttttcaccgca
cccttgcccgcgccggatgccgcctggcgcaccctgacgctgacccagttgatccgcttt
taccgcaatcccagccgttatctgctgcgcgagcgtctgggtgtggacctgcccgaaagc
aaggagccgctggccgatgtcgaaccgtttgtgcccgactggccggcccgccaagctctg
gcggcccgtctgctgccggtgctgatggaaacggagctgaccgccgaggctttgctggca
ctcgcccaggccggcgcagagtatccggccggtgcgctgggcgaagacgcgctgcgggcc
gaactgaccgccctgcagacctacaccgcccgcctgcgtgcagcaacccccggtgcgtgc
ctgccggcgcatgaatcgcgccttgcgcacacactggaaggcgaaagctgggagctacgc
accgctttcaccgatctgcgccccggcggccgcgtctatgcgcgcttcgatgacacccgc
gccggcgactatcttgccgcttggcttgcgcatctggcgctgtgcgcgcagccgccggac
ggggtggaatgcgtcacccgcggggtgtcgcgcgatggcgactttgtcctgctcaccgtg
ccggcggaagaagcgcgcacccgcctggccgaactcatcgcctactaccgcgccgggttg
atgcgcccgctgcatttctaccccaaatcggcctgggcgtatgtggagggaggccaaaac
atcggcgcggcgcagcgcacctggcacggcgggcggcacacggcgtttggcgaagccagc
gatcccgcgtaccgcttggccctgcgcgggctggccgagccgttggacgaggaattctat
gccttggccgagacggtgtttgcgccgatgatgacctatctggaagatgcgcggcgcgcc
tag
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