Rhodocyclaceae bacterium Thauera-like: B4966_02810
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Entry
B4966_02810 CDS
T05394
Name
(GenBank) DNA-formamidopyrimidine glycosylase
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
rbh
Rhodocyclaceae bacterium Thauera-like
Pathway
rbh03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
rbh00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
B4966_02810
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rbh03400
]
B4966_02810
Enzymes [BR:
rbh01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
B4966_02810
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
B4966_02810
DNA repair and recombination proteins [BR:
rbh03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
B4966_02810
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Fapy_DNA_glyco
H2TH
zf-FPG_IleRS
NFACT_N
Motif
Other DBs
NCBI-ProteinID:
AUL99230
UniProt:
A0A2K9L813
LinkDB
All DBs
Position
593256..594083
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AA seq
275 aa
AA seq
DB search
MPELPEVEITCRGIRPYVEARALSALVVRHPRLRLPVPADLAQCLTGQVLRRVTRRAKYL
LLGFDAGKVIVHLGMSGSLRVVDAGQPAGRHDHVDLVFGDIALRLRDPRRFGLLAWQPET
EAEHPLLAGLGPEPLEDGFDGAEWFRVTRGLRQPIKHALMDPRKVVGVGNIYAAESLFRA
HIHPLEPAGALGRARCQRLAQAVKETLRDAIAAGGSTLRDFVGGDGQPGYFQQQYFVYGR
EGEPCRVCGSAIRRVVSAQRSTWFCPRCQRSSGRG
NT seq
828 nt
NT seq
+upstream
nt +downstream
nt
atgccagaactgcccgaagtcgaaatcacctgccggggtatccgtccgtatgtcgaagcg
cgcgcgctcagcgcgctggtggtacgccatccgcggctgcgcctgccggtgccggcggat
ctggcgcagtgtctgaccgggcaggtgctcaggcgggtgacgaggcgggccaagtacctg
ttgttgggtttcgatgcggggaaggtgatcgttcatttgggcatgtccggcagcttgcgg
gtggtcgatgccggtcagccggcgggccggcatgaccatgtggacctggtttttggcgat
atcgcgctgcgcctgcgcgacccgcggcgctttgggttgctggcatggcagcccgaaacg
gaggcggagcatccgctgctggcgggtctggggccggaaccgctggaggacggtttcgac
ggtgctgagtggtttcgggtgacacgcggcctgcgtcagcccatcaaacatgcgttgatg
gatccccgtaaggtggttggtgtgggcaacatctatgcggcggaaagtctttttcgtgcc
cacatccatccgctggagccggccggtgcgctgggtcgcgcacgttgtcagcggttggcg
caggcggtcaaagagacgctgcgcgatgcgattgccgcaggcggtagcacgttgcgtgat
tttgtcggcggagacggtcagccgggctattttcagcagcagtatttcgtctatgggcgt
gaaggtgagccctgccgggtgtgtggcagcgccatccggcgcgtggtcagcgcccagcgc
tcgacctggttttgcccgcgctgtcagcgctcgagcgggcgaggctga
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