Rhodocyclaceae bacterium Thauera-like: B4966_04245
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Entry
B4966_04245 CDS
T05394
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
rbh
Rhodocyclaceae bacterium Thauera-like
Pathway
rbh03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rbh00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
B4966_04245
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rbh03021
]
B4966_04245
03019 Messenger RNA biogenesis [BR:
rbh03019
]
B4966_04245
Transcription machinery [BR:
rbh03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
B4966_04245
Messenger RNA biogenesis [BR:
rbh03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
B4966_04245
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
AAA_25
OB_RNB
Fungal_virus_P2_C
NACHT
S1CSD-TOTE-2
Mor
AAA_22
AAA
Motif
Other DBs
NCBI-ProteinID:
AUL99465
LinkDB
All DBs
Position
complement(895847..897109)
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AA seq
420 aa
AA seq
DB search
MHLSELKALHVSELLEMAVANEIDGANRLRKQELVFALLKNRAKKGEPIYGDGALEVLPD
GFGFLRSPEASYLAGTDDIYVSPSQIRRFNLHTGDTIEGEIRTPKDGERYFALVKLDKIN
GRPPEECKHKILFENLTPLHPQECLKLERDMRGEENITGRIIDMIAPIGKGQRGLLVAPP
KSGKTVMLQHIAHAITANHPDVTLIVLLIDERPEEVTEMQRSVKGEVVASTFDEPATRHV
QVAEMVIEKAKRLVEHKRDVVILLDSLTRLARAYNTVQPASGKVLTGGVDANALQKPKRF
FGAARNIEEGGSLTIIATTLIDTGSRMDDVIYEEFKGTGNMELHLDRRMAEKRVYPAINV
NRSGTRREELLLKPDVLQKVWILRKLLYGMDDIDAMEFLLDKVKATKSNAEFFDAMRSGR
NT seq
1263 nt
NT seq
+upstream
nt +downstream
nt
atgcatctatcggagctcaaggccctccacgtcagtgaattgctggaaatggccgtcgcc
aatgaaatcgacggcgccaaccggctgcgtaagcaggagttggtattcgccctgctaaaa
aaccgggccaaaaagggggagccgatctacggcgacggcgcgttggaagtattgcccgat
ggtttcggcttcctgcgctctccggaggcctcatacctggcaggcaccgacgacatctac
gtctcaccctcgcaaatccgtcgcttcaaccttcataccggcgacaccatcgagggcgag
atccgcactcccaaggatggcgagcgctactttgcgctggtcaagttggacaagatcaac
ggccgccccccggaggaatgcaagcacaaaatcctcttcgaaaacctcacgccgctgcac
ccgcaggaatgccttaagctggagcgggacatgcgcggcgaggaaaacatcactggccgc
atcatcgacatgatcgcgccgatcggcaagggtcagcgcggtttgctggtcgcgccgccc
aaaagcggcaagacagtgatgttgcagcacatcgcacacgcgatcaccgcgaaccacccc
gatgtcaccctgatcgtgctgctgatcgacgagcgtccagaagaagtcaccgagatgcag
cgctcggtcaagggcgaggtcgtggcctcgacctttgacgaaccggctacccgtcacgtg
caagtcgccgaaatggtgatcgaaaaagccaagcgcctggtcgaacacaagcgcgacgta
gtgatcttgctcgattcgctgactcgcctggcgcgcgcctacaacacggtgcagccggcc
tcaggcaaggtgctcaccggcggggtagacgccaacgccctgcaaaagcccaagcgtttc
ttcggcgcggcacgcaacatcgaagaaggcggctcgctgacgatcattgccaccaccttg
atcgacaccggcagccgcatggacgacgtgatctacgaagagttcaagggcaccggcaac
atggaactgcaccttgaccgccgcatggccgaaaagcgcgtctatccggccatcaacgtc
aaccgctccggtacgcgccgggaagaactactgctgaagcccgacgtgctgcaaaaagta
tggatcttgaggaagctcttgtacggcatggatgacatcgatgcaatggaattcctgctc
gacaaggtcaaagccaccaagagcaacgcagagtttttcgacgcgatgcgctccggccgc
taa
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