Robiginitalea biformata: RB2501_00126
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Entry
RB2501_00126 CDS
T00992
Name
(GenBank) ATP-dependent RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
rbi
Robiginitalea biformata
Pathway
rbi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rbi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
RB2501_00126
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rbi03019
]
RB2501_00126
03009 Ribosome biogenesis [BR:
rbi03009
]
RB2501_00126
Enzymes [BR:
rbi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
RB2501_00126
Messenger RNA biogenesis [BR:
rbi03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
RB2501_00126
Ribosome biogenesis [BR:
rbi03009
]
Prokaryotic type
rRNA helicases
RB2501_00126
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
AAA_22
Motif
Other DBs
NCBI-ProteinID:
EAR14435
UniProt:
A4CNG8
LinkDB
All DBs
Position
2826420..2828159
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AA seq
579 aa
AA seq
DB search
MEAVDALGFVQPTGVQLETIPLLLGPETDLVALAQTGTGKTAAFGLPLLEKTDSASRKSQ
ALILAPTRELCLQITSELQAYAKFIKGLSIVAVYGGASIQQQAKALKNGGQIIVATPGRM
KDMISRKLADISSIGYCVLDEADEMLNMGFYEDLVDILSHAPKDKSTWLFSATMPNAVAR
IARDFMHQPAEVTVGTRNEAIASVQHEYYTVAGRDRYPALRRLADANPGLFSVIFCRTKR
DTQKVAEKLIEDGYNAGALHGDLSQQQRDLVMNAFRKRQLQLLVATDVAARGIDVDDVTH
VIHYQLPDETETYTHRSGRTGRAGKSGVSMVILTRSEQRRIRAIEKIIGRPFEQKKLPDG
MEICEIQLYHLANKIRSVEVNPSIEAYLPAIEDVFKGMDRDTLIRKMISVEFSRFYDFYS
KTRDLNPAAGAAESARDSGTTRFFINIGEMDGLDWMQLKDLLKAATGLGRDDIYKVETKD
SFSFFNTDSSMAPLVMESIQGVTYEGREVRVEISSSPQDGGSNRKGGKKFRKGGKKSYKG
GGQGKGGYSKKGGYPKKGKPAGGKKKKGAKKGGKRAGFY
NT seq
1740 nt
NT seq
+upstream
nt +downstream
nt
gtggaggccgtcgacgccctcggatttgtacaacctacgggcgttcagctcgaaaccatc
ccgctgctactcggcccggaaaccgacctggttgcccttgcccagaccggtacgggaaaa
actgccgccttcggcttgccacttctggaaaaaacggattccgccagccggaagagccag
gcgctcatcctggcccctacccgggaactctgcctgcagattacctcggaattacaggcc
tatgccaaattcatcaaggggctctccattgtggccgtatacggaggcgcgtccatccag
caacaggccaaggcacttaaaaacggcggtcagatcatcgtggccacgccggggcggatg
aaagacatgatcagccggaagctggcggatatatcttccattggctactgtgtcctggac
gaggccgatgaaatgctgaacatgggtttttacgaagacctggtggatatcctctcccat
gcacctaaagacaaatcgacctggttgttttcggccaccatgccgaacgccgtcgcccgg
atagcccgggactttatgcaccagcctgcagaggtaaccgtcggaacccgaaacgaggcc
attgccagcgtccagcacgaatactacaccgttgcgggcagggaccgttacccggccctc
aggcgcctggccgacgcaaatcccggcctgttttccgtaattttctgccgaacaaaacgc
gacacccaaaaggtggcggaaaaattgatcgaagacgggtataacgccggcgccctccac
ggcgacctaagccaacaacagcgcgacctggtgatgaatgccttccgcaagcggcaactg
caattactggtagctaccgatgtagccgcccggggcatcgatgtggacgatgtcacccat
gtgatccattaccagctgcccgacgaaacagagacctacacccaccgcagcgggcgtacg
ggccgcgcgggaaaatccggggtgtccatggtgattctgacgcgctcggaacaacggcgg
atccgcgccatcgaaaaaataattggacggccatttgagcagaaaaagctgcccgacgga
atggagatttgcgaaatccagctctatcacctggccaacaaaatccggtctgtggaggtc
aatccctctatcgaggcgtacctcccggccattgaagatgtctttaagggcatggaccgg
gatacgctgatccggaagatgatctcggtggaattcagccggttctatgacttctacagc
aagacgcgcgacctgaacccggccgcaggggctgccgaatcggcccgggattccgggacc
acgcggttttttatcaatatcggcgaaatggacggcctggactggatgcagctcaaggac
ctgcttaaagcggcaaccggactcggccgtgacgacatctacaaggtggagaccaaggac
agtttctccttcttcaacaccgattcttccatggccccactcgtgatggaatcgattcag
ggagtcacctacgaggggcgggaagtccgtgtggaaatttcttccagccctcaggacggg
ggatcgaacaggaaaggcggcaagaaattccgcaaaggcggcaagaagtcctacaaaggc
ggaggccagggaaaaggcgggtactccaaaaaaggggggtatcccaaaaaaggaaagccc
gcggggggcaagaagaaaaagggggccaagaaaggcgggaaacgcgccggcttctattag
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