Robiginitalea biformata: RB2501_01535
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Entry
RB2501_01535 CDS
T00992
Name
(GenBank) outer membrane autotransporter barrel domain protein
KO
K20276
large repetitive protein
Organism
rbi
Robiginitalea biformata
Pathway
rbi02024
Quorum sensing
Brite
KEGG Orthology (KO) [BR:
rbi00001
]
09140 Cellular Processes
09145 Cellular community - prokaryotes
02024 Quorum sensing
RB2501_01535
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SprB
CHU_C
Motif
Other DBs
NCBI-ProteinID:
EAR14067
UniProt:
A4CPY2
LinkDB
All DBs
Position
complement(3138933..3147452)
Genome browser
AA seq
2839 aa
AA seq
DB search
MLPKKNRHLWYALLMLVATIISSSAIAGGTLGGFLSRIDSVISDSQQPQGVVGIDPAASI
AIGTTDFPAPAAPALFSTIIQNADEEVTCADNGFTIARFNLCGDYDDRIISVSGSHSSYQ
WQQLVPGGSCTFDVNEDCPPIIGSECNPYWQTISGASTLTLNAASIPASSGAEFRVRVNG
GSYYYFKVKKSTITQTYVKRDFICGVPGRIQITNLSSAYEFSIDNGTGFGPWQTSPIFGS
LDPGTYVVKARLQNTSNTCEYPYEPIVIEEQEIDIDVEFTDAQCFGETGSITVTVNNVPG
PFKYTLLDASGVPQEFTTFIPNNPYTFAAVGFGTYSVQVETQQCTGDPGNGIPPPRQSTD
INGNPIVIGDGLVALSASTEVNESLSSDPVCGANDADIIVRTSGGAGPYTFTVSDGGNSG
GTYTGQTTYNVTAAGTYEFFITDANGCTTTATASVEELTPPDVTASGTDGDCNNGARIDI
NIIDAKGYNLLFRADPADPWSANPVLTVPTGTYNQIQVQYQQAAFSCIYTIPTSISVTNV
GAITGNAVKIQDRLCDGAGGVDGGIIEFQGPYSGGSGSGYEFSIDGVNFSTQETYSNLAP
GTYTPIIRDAGGCRLELTAITIADVDPPTDLAFAQSAINCAAGTSDVQLTPTSNAPIVLY
EVISPISVNNGGSDTFSGLSVNTAYTFRITDANGCTYTESFTPAVISTIRARVKSGGDTR
VCTGAADGTGTFLIDGFTNNYTYNINGGPESAPQNDAEVDLPLSGAGTYTITVTDADTGC
TDTASITIEEPASPLTLSGNVTAMTCANGNTGRVVATAGGGWGTYRYSLEMPNGFVSGPK
SGRTFGNLTQSGNYILTVEDAEGCTATFNFSLTPIDAPTLTLDAGASDYCYVPGTGATLA
VSSSAGTAPLASHQYRINGGPLQASPVFTGLNPGNYTIEVVDGNNCTDAVTATINSQLRV
NTSIDAEIPCGGADGGIRVQVTGGYLAGAGPKQYEVSANGGATYGAPVPLASNNFVYNTN
VPGDYVFRVTDNRGCVAVSSPITLNPPVNIDPASIAVTPASCGQTNNGIVTVTPDATSGI
PPYEISFDGGAFGSQSVFSNLNAGQTYTVIVRDARGCETVPQDVTIPLDGTPPPDATVAP
VTATCSAGLVEGNIQVTSVAGGTADYTYILQDQFGVELDRIGPTSSTAETFTNIVPGIYT
VVTLDALGCRDEDTVTVDQTTVDVVPDPVAAPVCAAGGFTNTVEIVGGVGPFEIRLATDP
NPPVPVNSPPRRHTFNGLQFGVTYTVEVTDLGTGCVYLDEIPPVDGPNPLEVTATSTPGY
CDANRFGQILYDVTGFTPGSDLLIELLNTDDGTRITIDSPTNVSPTYSGAYETLPGNYQV
IVTESTDNCTDATAVVIDQNTPNIDIIAQEPANCNAFGQFTVQGSGGGGGPYEFAFMDAG
VPPTPGDFDTATTFIGPAGNYDVYVRDITGCTSFAIAQIINLEPDLPVPTFVVENQCDNT
VTSFDILVQIPSTVDTPRFTLNGDEQFPVLNGGVWEYTYTVGTPGDYVVDVVDANGCTSQ
GTATVYEFLSASGGFTTEPTCNAADGEISISTLGGSGDFTFELRTGAGAYIDDNTTGVFT
GYAPGDYEVLVTDNIVNDGVINCFFLVDGITLDAAIPPVISAVIDTDISCNGANDGAIDV
FLQAGTDADSPITYTLYEAGTSTIVQQNGSGSFTGLVPGFYDVTVVTSRNCETRQDDIEI
SEPPAFSITASAPDFACEPGANRYSSTIVTVNVVDPGTPGYQYSITGFGNYQSSPTFEVV
DNGSPQDITIYAIDANGCQATFDLPTLNPPTDVVPTLSLQAALTCTTDERIRVDVVGSTD
FTLSVVSGPASPAAVTNNPGDSFVLMDLPLAGGYLLEITDNIGGCSYPLPLHEVFEPTYP
AVTISEANPVRCAVPGNDGALFIEVADYTGVYDYQVYQVDSGGNRIMPALASGSFDTNNF
PDVSGDPARITGLPGGNFIVDIVSQDTPGCPAESNVATVRAPNGPLLPVAVEEGNVSCND
NLGIIVASATGGWDIAPYEYRLLRDDGSGYAEVAPYSASDRFENLGSGDYRVEVRDVEGC
TATVDITLNPIPPIQVGIREPQALICPGGNNAILEAYDPATGDALTALTGASGGVPGAGY
KYQLIYLGSNDILDELSRSGLQDSPVFAGAGGEGYISTGWYAIEVSSTYDCVGITEPYFV
NPPPPIIPSLVQVRAPGCGGLGEMRLSVQNPEPGFEYEYRSVTALPSDPFISMGVGNTSV
LISGGPGFYQFDVRKVNASNVCDVVRANGLTLIDAQDLDLVVNLPDDISCANEIDGRIES
FASGGVGDNSFILYSGDPGPDPFNPLPGAVVVRGPQPDGTFEQLTDGNDYYVTVTSGNTC
GDVEGPLTIMRPAPIVYSASATPVSCAGEEDGSITIEVTSGGEGLIQFAIAPNFNEFFSD
PATPGVYTFTDLEGAPGAGRSYDILIQDAEGCSELTSISVVEPQPIELSFTATDETCIGA
ADGSAQLTIAGGTPFVDGSGIPYYETSLNSSADVDYVRNDALFYDNLLGGESYVVFVRDA
NGCTANIVIPIEIGVDLTANVDVRYGCDGIFPNNSVEVTLTDSGLYDEVLIALDPADPTD
AITAEATDVRSWGDLPAGDHTVYIYHENGCTIFEEFTIDDYQPLTLDAMQTGPNEITATA
SGGFGGYEFYFNGDSFGSDNVFTINYDANVRIRVVDQMGCMVEISFPFDFEGMVELPNYF
TPDGDGMNDEWSPGNREFFPNIEIKIYDRYGRVVAILDQVKNWDGTYEGTELPTGDYWYV
VNANDNEKQQYVGHFTLYR
NT seq
8520 nt
NT seq
+upstream
nt +downstream
nt
atgctcccaaaaaagaacaggcatctctggtatgccctgttgatgctagtggccactatc
atcagctcttcagccattgctggcggtaccctgggaggatttttgtcccgtatcgacagc
gtaatttccgatagccagcagccccagggggttgtcggcatcgaccctgcggcaagtatt
gcaataggaaccacggatttccctgctccggccgccccggcactcttctctacgattatc
cagaatgcagacgaggaagttacctgtgcggacaacgggtttaccattgcgcggtttaac
ctttgcggggactacgacgaccggattatttcggtaagcggaagccacagcagttatcaa
tggcaacaactggtacccggtgggagctgtacctttgacgtcaacgaagactgcccgccc
attatcgggagcgagtgcaacccgtactggcagacgatttccggggcttccacccttacc
ctgaatgccgcttccattccggcctccagcggggcggaatttcgcgtgcgggtcaacggg
ggttcctattactacttcaaggttaagaaaagtaccattacccagacctatgtgaagcgg
gattttatctgcggggtgcccgggcggatccagatcaccaacctctcgagtgcctacgaa
ttcagcatcgacaacggcacggggttcggcccctggcaaacctccccgatcttcggcagc
ctggacccgggaacctacgtggtgaaggcgcgtttgcagaatacttcgaacacctgtgaa
tacccgtacgaacccattgtcatcgaggaacaggagatcgacatcgatgtggaattcacc
gatgcccagtgcttcggggagaccggcagcatcaccgtaacggtgaacaacgtgccgggc
cctttcaaatacacgctcctggacgcttcaggcgtgccccaggagttcaccacctttatc
ccgaacaacccctatacatttgccgccgttggtttcggtacctacagcgtacaggtggaa
acccagcagtgtacgggcgacccggggaacggtatcccgcccccccgccagtccacggac
attaacggcaaccccattgttatcggggacggcctggtggccctttcagcttcaacggag
gtgaatgaaagcctgagttcggaccccgtttgcggggccaacgatgcggatatcatcgtg
cggacatccggcggggccggcccgtatacgtttacggtgagcgacggggggaattccgga
ggcacatacaccgggcagactacctacaacgtcacggcagcggggacctatgaattcttt
atcacggacgctaacggctgtaccactacggcaacggccagcgtggaggaactcaccccc
ccggacgtaaccgcttccgggacggacggcgactgcaacaacggtgcccgcatcgacatc
aacatcatcgacgccaaggggtacaacctcttgttccgcgccgatcccgccgacccctgg
tcggccaatccggtactcaccgtgccgacggggacctacaaccagatccaggtgcagtac
cagcaggcggccttcagctgtatctatacgatcccgacttccatctcggtgaccaatgta
ggggccatcaccggcaatgccgtcaagatccaggatcggctctgcgacggggccggcggc
gtggacggggggatcatcgaattccagggaccgtattccgggggttccgggagcggctat
gagttcagtatcgacggggtgaatttcagtacccaggaaacctattcgaacctggcgccg
ggcacctatacgcccatcatccgggatgccggcggctgccgcctggaactgacggccatc
accattgccgatgtggatccccctaccgacctggcctttgcccagagcgccatcaattgc
gcggccggcacttcggacgtgcagctcacccccacgagcaacgccccgattgtcctttac
gaggtcatcagccccatttcggtcaataacggcgggagcgatacgttttccggtctgagc
gtcaacacagcctataccttccgcattacggatgccaatggatgtacgtatacggagagc
tttacccccgcagtcatcagcaccatccgcgcccgggttaaatccggcggggatacccgc
gtatgtaccggtgcagcggacggtacagggaccttcctgatcgacgggtttacgaacaac
tatacctataatatcaacggggggccggagagcgcaccccagaacgacgcggaagtagac
ctgccgctttccggggccggtacctacaccattaccgttacggatgcggatacgggatgt
acggacactgcaagcattaccatcgaggagccggccagcccgctgaccctgtcggggaat
gtaaccgccatgacctgtgccaacgggaatacgggacgggtggtggcaacggccggtggc
ggttggggtacctaccgctacagcctggagatgcccaacggctttgtcagcggcccgaaa
agcgggcggacgtttggaaacctgacccagagcggcaactacatcctcacggtggaagat
gccgaaggatgtacggctaccttcaacttcagcctgacgcccatcgacgccccgacgctt
accctggacgccggcgcttcggattattgttatgtgccgggtaccggcgccaccctggcg
gtgagctcctcagcggggacggcccccctggcttcccaccagtaccggatcaacggaggc
cccctgcaggccagccctgtatttaccggactgaaccccggaaattacaccatcgaagtg
gtggacgggaacaattgtacggatgcggtcaccgcgacgattaattcccagttgcgggtg
aacacgagtatcgatgcggaaatcccgtgtggcggtgccgacggggggatccgcgtgcag
gtgacgggcgggtacctggccggggccgggcccaagcagtacgaggtaagcgctaatggc
ggggctacctacggcgccccggtacccctggcgagcaacaactttgtatacaacacgaat
gtacccggggattatgtgttccgggtaacggataaccggggttgcgtggccgtgtccagc
ccgattacgctgaacccgcctgtaaatattgacccggccagcatcgcggtgactcctgcg
agctgcgggcagaccaacaacggcattgtcaccgttaccccggatgccaccagcggcatc
ccgccttacgaaatcagctttgacggcggggccttcggttcccagtccgtcttttccaac
ctgaacgccggccagacctatacggtaatcgtccgggatgcccgcgggtgcgaaaccgtg
ccccaggacgtaaccattcccctggacggcacgcccccgccggatgcaacggttgcgccg
gtgacggctacctgttcggccggccttgtggaaggcaatatccaggtaacctctgtggcc
gggggaaccgccgattacacatatatcctgcaggaccagttcggcgtggaactggaccgg
atcgggcccacttccagtaccgcggaaacgtttacgaatatcgtcccgggtatctatacg
gtggtaaccctggacgccctgggttgccgggatgaggatacggtgaccgtggaccagacc
accgtagatgtggtcccggatccggtggcagcaccggtttgcgccgctggcggatttacc
aatacagtggaaatcgtggggggcgtgggccccttcgagatccgcctggctaccgacccg
aacccgccggtcccggtaaacagcccgcctcgacggcataccttcaacggcctgcaattt
ggcgtaacgtacaccgttgaggtcaccgacctgggcaccggctgtgtgtacctggacgaa
atcccgcccgtggacggacccaacccgctggaggtgaccgccacgagcaccccgggttat
tgtgacgccaaccgctttggccagatattatacgacgttaccgggtttaccccgggctct
gacctgctgattgaacttctgaacacggacgacgggacgcggatcaccattgattcgccg
accaacgtaagtcccacgtattccggagcctatgaaaccctgccggggaattaccaggtg
atcgttaccgaatctaccgataattgtacagatgccactgccgtggtcatcgaccagaat
acgcccaatatcgatatcatcgcccaggagcccgccaactgtaatgcctttggccagttt
acggtccagggatccgggggtggcggcggcccctatgaatttgctttcatggatgccggc
gtaccgcccacgccgggagatttcgatacggcaaccacctttatcgggccggctgggaat
tacgacgtctatgtgcgcgatattacgggatgtacctcatttgccatcgcccagatcatc
aacctggaaccggacctgcccgtacccacctttgtggtggagaaccagtgcgacaacacg
gtcacctccttcgatatcctggtacagatcccttcgacggtagatacgccgcgttttacg
cttaacggggacgagcagttcccggtactcaacggcggggtgtgggaatacacctatacg
gtagggacccccggggactatgtggttgacgtggtagacgccaacggctgtacgagccag
ggcaccgccaccgtctacgagttcctgagcgcctccggcggctttaccacggaaccgacc
tgtaacgcggccgacggggaaatctccatttccaccctgggcggtagcggggactttacc
tttgagctgcgcacgggggccggggcctatattgacgacaataccacgggggtctttacc
ggctatgccccgggcgattacgaggtgctcgttacagacaatatcgtgaatgacggggtg
atcaattgtttcttcctggtggacgggattaccctggatgcggccatcccgcccgtgatc
agcgcggtgatcgacacggatatttcctgtaacggggccaacgacggggccatcgacgtc
ttcctgcaggcgggcacggatgccgacagcccgattacctatacgctttacgaggcgggg
acttccaccatcgtccagcaaaacggttccgggtcgtttaccggcctggtacccggcttc
tatgacgttaccgtggtgaccagccggaattgcgagacccgccaggacgacatcgaaatc
tccgagcccccggcattttccatcacggccagcgccccggattttgcctgcgaaccgggt
gccaaccgctacagttcgacgattgtaacggtcaacgtggtggacccgggcaccccggga
taccagtacagtattaccgggtttggaaactatcagagttccccgacctttgaggttgtc
gacaacggctccccccaggatattacaatttacgccatcgacgccaacgggtgccaggcc
acctttgatctgcccaccctgaacccgcccaccgatgtggtgccgaccctgtccctgcag
gcagccctgacgtgtaccacggacgagcggatccgcgtggatgtggtgggaagtacggat
ttcaccctttccgtggtcagcggtccggccagcccggctgcggtgacgaacaacccggga
gactcctttgtgctgatggacctgcccctggccggcgggtacctgctcgagatcacggac
aatatcggcggctgttcttatccgctccccctccacgaggtctttgagcccacctacccg
gcggtgaccatcagcgaggcaaacccggtgcgctgtgcagtgcccggaaatgacggggcg
ctctttatcgaggttgcggactacaccggggtgtacgattaccaggtctaccaggtggac
agcggcggcaaccgcatcatgccggccctggccagcggcagctttgacacgaataacttc
ccggatgtcagcggcgatcccgcccggatcaccggcctgccggggggcaattttatcgtg
gacatcgtttcccaggataccccgggctgcccggccgaatccaatgtggccaccgtacgg
gccccgaacgggcccctgcttcccgtggcggtggaggaaggcaacgtgtcctgtaacgac
aacctgggcatcatcgtggcttctgcaaccggcggttgggatattgccccgtatgagtac
cgcctgctccgcgacgacgggagcggctatgcggaggttgcgccctattccgcttcggac
cgtttcgaaaacctgggcagcggggactatcgcgtggaagtccgggacgttgagggatgt
acggccaccgtggatatcaccctaaatccgattccgcccatccaggtgggcatccgggaa
ccccaggcactgatctgcccgggcgggaacaatgccatcctcgaagcctatgacccggca
acgggcgatgcccttacggcccttaccggtgcttcagggggcgttccgggagcgggttac
aaataccagctcatctacctgggcagcaacgacatcttggacgagctctcccgcagcggc
ctgcaggattccccggtatttgcaggtgcagggggcgaagggtatatcagcacgggctgg
tatgctattgaagtatcgtccacctacgattgcgtgggtattaccgaaccctatttcgta
aatcccccgcccccgattatcccgagcctggtacaggtgcgggccccgggttgcggtggc
ctcggcgagatgcgcctgagcgtccagaacccggaaccgggctttgaatacgaataccgc
tcggtgacggccctgccttccgacccgtttatttcgatgggggtgggcaacacctcggta
ttgatttccgggggccctggtttctaccagttcgacgtgcgcaaggtcaatgcctccaat
gtctgcgacgtggtgcgcgccaatggcctgacgctcatcgacgcccaggatctggacctg
gtggtgaacctgccggacgacatttcctgcgccaacgagatagacggccggattgaatcc
ttcgccagcggcggggtaggggacaacagctttatcctgtatagcggggacccgggcccg
gatccgtttaacccgctgccgggcgccgtggtagtccgcggaccgcaacccgacgggact
tttgagcaactcacagacggaaacgattactacgtaacggttaccagcgggaatacctgc
ggggacgtggagggtccgctcactatcatgcggccggcacccatcgtgtattcggcttcg
gctaccccggtttcctgtgccggagaagaagacggcagcatcaccatcgaggtgaccagc
gggggggaaggcctgatccaattcgcgatcgccccgaatttcaacgaattcttcagcgac
ccggctaccccgggcgtatataccttcacggaccttgaaggagcccccggcgcgggccgg
tcttacgatatcctgatacaggatgccgaggggtgcagtgagctcacgagcatttccgtg
gtggaaccccagcctattgaactgagttttaccgcaacggacgagacctgtatcggggcc
gcagacggctctgcccaactcaccatcgccggggggacgccttttgtggacggatcgggc
atcccgtactacgagaccagcctgaattcctccgcagatgtggattacgtgcgcaacgat
gcgctgttctacgacaacctgctgggcggggaatcctatgtggtctttgtgagggacgcc
aacggctgtaccgccaacatcgtcatccccattgaaattggggtggacctgacggccaat
gtggacgtgcgctacggctgcgacggcatcttcccgaacaattccgtggaggtaaccctg
acagacagcgggttgtacgacgaggtactcattgcgctggatcctgcagaccccacggat
gccatcacggcagaggccacggatgtccgcagctggggcgacctgcccgccggcgaccac
acggtgtatatctaccacgaaaacgggtgtacgatctttgaggaatttaccatcgacgac
taccagcccctgaccctggatgccatgcagacgggtccgaacgagatcacggctacagcc
agcggcgggtttggcggatacgaattctactttaacggggattcgtttggcagcgacaac
gtgtttacgatcaattacgacgcgaatgtccggatccgggtggtggaccagatgggttgt
atggtggaaatcagtttccctttcgactttgagggcatggtggaattgccgaattacttt
accccggacggggacggcatgaatgacgaatggtcgccgggcaaccgggaattcttcccg
aatatcgaaatcaagatctacgaccggtacggccgcgtggtggccatcctggatcaggtg
aagaactgggacggcacctacgaggggaccgaattacccaccggcgattactggtatgtg
gtgaacgccaacgacaatgaaaaacaacaatatgtagggcattttaccctgtacagataa
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