Robiginitalea biformata: RB2501_11727
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Entry
RB2501_11727 CDS
T00992
Name
(GenBank) putative ATP-dependent DNA helicase
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
rbi
Robiginitalea biformata
Pathway
rbi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rbi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
RB2501_11727
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rbi03019
]
RB2501_11727
03400 DNA repair and recombination proteins [BR:
rbi03400
]
RB2501_11727
Enzymes [BR:
rbi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
RB2501_11727
Messenger RNA biogenesis [BR:
rbi03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
RB2501_11727
DNA repair and recombination proteins [BR:
rbi03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
RB2501_11727
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
RQC
RecQ-1-like_HTH
Helicase_C
HRDC
RecQ_Zn_bind
ResIII
HTH_40
HHH
Peptidase_C36
Motif
Other DBs
NCBI-ProteinID:
EAR14994
UniProt:
A4CMV2
LinkDB
All DBs
Position
1843204..1845405
Genome browser
AA seq
733 aa
AA seq
DB search
MILNETDLKASLKKYFGFSQFKGLQEDVIKNIVQGRDTFVIMPTGGGKSLCYQLPALIGE
GTAIVVSPLIALMKNQVDAIRGVSDNDGVAHVLNSSLTKGEVKAVKEDITSGVTKLLYVA
PESLTKEEYVDFLQGVTLSFVAIDEAHCISEWGHDFRPEYRNLRSIIDRLGDDIPIIALT
ATATPKVQEDILKNLGIPEAEVFKASFNRPNLYYEVQPKTKNVDADIIRFVKKNAGKSGI
IYCLSRKRVEELAQVLQVNGVSAVPYHAGFDAKTRSRYQDMFLMEEVDVVVATIAFGMGI
DKPDVRYVIHHDIPKSIESYYQETGRAGRDGGEGHCLAFYSYKDVEKLEKFMAGKPVAEQ
EIGNALLQEIVAYAETSVSRRKFILHYFGEEFDEVNGEGADMDDNVRNPKEKVEARDDVV
KIIRAVKETNEKFKAKEIVKTLTGSSNALIAAHKTAGKEVFGSGADKDKHYWMALVRQIL
VAGLLKKEIEQYGILHVTPSGEEFLKNPTSFMMTRDHRYSEAQESPSGGTVRPRSGTGDD
TLLKLLRDLRRKEAAKLEVPPFVIFQDPSLEDMALKYPVSHEELVNIHGVGEGKARKYGK
PFLGLISQYVEEHNITRPEDLVVKSTGANSALKLYIIQNVDRKLPLDDIAAAKGLELPEL
VREMEQIVFSGTRLNLGYYIDDILDEDQQEEIHDYFLEAESDDIEEALKEFDGEYEDEEL
RLYRLKFMSEVAN
NT seq
2202 nt
NT seq
+upstream
nt +downstream
nt
atgattttgaatgagaccgacctgaaagcgtccctgaagaaatactttgggttttcgcag
tttaagggacttcaggaagacgtaattaaaaatattgtccagggcagagacaccttcgtc
ataatgcctacgggaggagggaagtcgctgtgttaccagttgccggccctgatcggcgaa
ggcacggccatagtggtatccccactgattgccctgatgaaaaaccaggtggacgccatc
cggggcgtctcggacaacgacggggtggcccacgtgctgaattcctccctgaccaagggt
gaggtcaaagccgtgaaggaggatattacctccggggtcaccaaattgttgtacgtggcc
cccgaatcgctgaccaaggaggaatacgtggacttcctgcagggggtaaccctttccttt
gtcgctatagacgaagcccattgcatctcggaatgggggcacgatttccgtccagaatac
cggaatctgcgatccattatcgaccgcctcggagacgacatcccgattatcgccctgacg
gcgacggcaacccccaaggtacaggaagacatcctcaagaatctgggtatcccggaagct
gaagtattcaaggcttccttcaaccgcccgaacctgtactacgaggtacagcccaaaacc
aagaacgtggatgcggacattatccggtttgtgaagaaaaacgccgggaaatcgggtatt
atatactgcctgagccgcaagcgggtggaggaactcgcccaggtgctgcaggtaaacggg
gtcagcgcggtgccgtaccatgccggttttgacgccaagacccgctcccggtaccaggat
atgttcctgatggaggaggtggatgtggtcgtggctaccatcgccttcggcatggggatc
gacaagccggatgtgcgctatgtgattcaccacgacattcccaagagcattgagagctac
taccaggaaaccggccgggccggccgggacgggggcgaaggccactgcctggctttctac
agctacaaggacgtggagaaactcgaaaaattcatggccggcaagcccgtggccgaacag
gaaatcggcaacgccctgttgcaggagatcgtcgcctacgcggaaacatctgtttcccgc
cggaaattcatcctccactatttcggggaggaattcgacgaggtcaacggcgaaggggcg
gatatggacgacaacgtccggaaccccaaggaaaaggtggaagcccgggacgacgtggta
aaaatcatccgggccgtcaaggaaacaaatgaaaaattcaaggccaaggaaatcgtcaag
acgcttaccgggtcgtccaacgccctgatcgcagcccataagacggccggcaaagaggtt
ttcggctccggggcggacaaggacaaacactattggatggccctggtccggcaaatcctg
gtagccggcttgttaaagaaggaaattgaacaatacggcatcctgcacgttaccccgtcc
ggtgaggaattcctgaaaaacccgacatcctttatgatgacccgtgaccaccggtacagc
gaggcccaggaaagcccttccggcggcacagtccggccgcgttccggcacgggggacgat
acgctgctcaagctgctgcgggacctcaggcgcaaagaagctgccaagttggaagtgccg
ccctttgtgattttccaggacccttccctggaggatatggctttgaaataccccgtcagc
catgaggaactcgtgaacatacacggagtgggggaaggcaaggcccgcaaatacggcaaa
ccgttcctcgggttgatttcacaatacgtggaggaacacaatatcacgagaccggaggac
ctggtggtaaaaagcacgggtgcaaattcggccctcaagctctatattatccagaatgta
gaccggaaactgccgctggacgacatcgcagcggccaagggcctggaattgccggagctc
gtccgggagatggaacaaattgtcttcagcggtacccggttgaacctgggctactacatc
gacgatatcctggacgaagaccaacaggaagaaatccacgattattttctggaggcggag
tcggacgatatcgaggaagccctgaaagaatttgacggggaatacgaggatgaggaactc
cggctctaccgcctaaaattcatgagcgaagtcgcaaactga
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