Robiginitalea biformata: RB2501_11792
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Entry
RB2501_11792 CDS
T00992
Name
(GenBank) hypothetical protein
KO
K18682
ribonucrease Y [EC:3.1.-.-]
Organism
rbi
Robiginitalea biformata
Pathway
rbi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rbi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
RB2501_11792
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rbi03019
]
RB2501_11792
Messenger RNA biogenesis [BR:
rbi03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
RB2501_11792
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_Y_N
HD
KH_1
HDOD
KH_PNO1_2nd
KH_KhpA-B
KH-I_KHDC4-BBP
KH_2
Motif
Other DBs
NCBI-ProteinID:
EAR15007
UniProt:
A4CMW5
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All DBs
Position
1852921..1854489
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AA seq
522 aa
AA seq
DB search
MDITTIAIALVVGLGIGFAIAKLLEKGQASKTIAAAKKESAAILKDARAEGENIKKEKIY
QAKEKFLELKAEHEKVILSKDKKITEAEKRTRDKESQVSSELARNKKLNEELEKQLEEIA
SKREFFERKQGELEKLHNSQVQQLEVISGLSAEEAKGQLLESLKETAKTDAMAYLQTTLE
ETKMTAQQEAKKIIVNTIQRIGTEEAIENCVSVFNLESDDVKGRIIGREGRNIRALEAAT
GVEIIVDDTPEAIILSCFDSVRREVARLSLHKLVTDGRIHPARIEEIVRKTEKQIEQEIV
EVGKRTVIDLGIHGLHPELIRTVGRMKYRSSYGQNLLQHSREVAKLCGVMAAELGLNPKL
AKRAGLLHDIGKVPNTETELETPHAILGMQWAEKYGEKPDVCNAIGAHHDEIEMKSLIAP
VVQVCDAISGARPGARRQVLDSYIQRLKDLEEIAFGFGGVQKAYAIQAGRELRVIVESEK
VSDEKAAQLSFEISQKIQTDMTYPGQVKVTVIRETRSVNVAK
NT seq
1569 nt
NT seq
+upstream
nt +downstream
nt
atggacattacaacgatagccatcgccctggtggttgggttggggatcggttttgccatt
gccaagctccttgaaaagggacaggcttccaagaccattgccgcggccaaaaaggaatcc
gcggccatcctgaaggatgcccgggccgaaggggagaatatcaaaaaagaaaagatttac
caggccaaggagaagttcctggagctcaaggcagagcacgaaaaagttatcctcagcaaa
gacaagaagatcacggaagccgagaaaaggacccgcgacaaggaatcccaggtaagcagc
gaactggcgcgcaacaaaaaactgaacgaagaactcgaaaagcagttggaggaaattgcc
agcaaacgggagttctttgagcggaaacagggggaactcgaaaaactgcacaacagccag
gttcaacagctcgaagtaatctcgggcctctcggccgaagaagccaagggccagttgctc
gagtctctcaaggaaaccgctaagacggatgccatggcctacctgcagaccacccttgag
gaaaccaagatgactgcccagcaggaagccaagaaaatcatcgtcaacaccattcagcgc
atcggcaccgaagaggctatcgagaattgcgtttcggttttcaacctggaatccgacgac
gtcaagggtaggatcatcgggcgggaaggccggaatatccgggcactggaagccgcaacg
ggtgtggaaatcatcgtggacgacaccccggaggccatcatcctctcctgttttgattcc
gtccgcagggaagtggcgcgtctgtcccttcacaagctggtcaccgacggccggatccat
ccggcgcgtatcgaggagattgtccgcaagaccgaaaagcagattgaacaggaaattgtc
gaggtagggaagcgcaccgtgatcgacctgggcatccacggcctccacccggaactcatc
cggacggtggggcggatgaagtatcgctcctcctacggccaaaacctcctgcagcactcc
cgtgaggttgccaaactatgcggggtgatggctgccgagctcgggttgaacccgaaactc
gccaaacgggccggcttgttgcacgatatcggcaaggtgccgaacacggaaaccgaactg
gaaaccccccacgccatcctcgggatgcagtgggccgagaaatacggggaaaagcccgac
gtgtgcaatgccatcggcgcccaccacgacgagattgaaatgaaatcgctgatcgcaccg
gtggtccaggtttgcgatgctatcagcggggcgcggccgggtgcacggcgccaggtgctc
gactcctatatccagcgactcaaggatctggaggaaattgcctttggcttcgggggcgtc
cagaaggcctatgcgatccaggcgggaagggaacttcgcgtgattgtggaaagcgaaaaa
gtcagcgacgagaaggctgcccagttgtcgtttgaaatttcccagaagatccagacggat
atgacctacccggggcaggtaaaagtcacggtaatccgggaaacacgttcggtaaacgtg
gcgaagtaa
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