KEGG   Rhizobium binxianense: PO860_06305
Entry
PO860_06305       CDS       T11088                                 
Name
(GenBank) ribonuclease J
  KO
K12574  ribonuclease J [EC:3.1.-.-]
Organism
rbin  Rhizobium binxianense
Pathway
rbin03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:rbin00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    PO860_06305
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:rbin03019]
    PO860_06305
Messenger RNA biogenesis [BR:rbin03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Ribonucreases
     PO860_06305
SSDB
Motif
Pfam: RNase_J_b_CASP RNase_J_C Lactamase_B_2 RMMBL Lactamase_B Lactamase_B_3 Anti-Pycsar_Apyc1 Regulator_TrmB
Other DBs
NCBI-ProteinID: WEA61474
LinkDB
Position
1269673..1271343
AA seq 556 aa
MAKQDELVFLPLGGVGEIGMNLALYGYGPPEHRQWIMVDCGVTFPGPDLPGVDLVLPDIR
FLASERKNLKAIIITHAHEDHYGALADLWPGLNVPVYASGFTAGLLEAKRNFEKATIGEV
PVTPFKAGDTINVGPFSIEGVAVNHSIPEPMSLMIRTPAGNVIHTGDWKIDHEPSLGPLT
DETRFRQLGDEGVLALMCDSTNALRDGVSPSEKDVSESLRKIIENAEGRVAITTFSSNVG
RIRTVAEAAEAAGREVLLLGSSLKRVVNVAQDIGLMEGVKPFISEDEYGYIPRDKVVVIL
TGSQGEARAALAKLSRDEMRNVAFAAGDIVVFSSRAIPGNEKAIQDIKNGLVEQGVHIIT
DTEALVHVSGHPRRNELQRMYEWTRPKIVVPVHGEATHLTAHKELAEQSGIAIVPRVRNG
DILRLAPGPVEVIGEAPHGRIYKDGSLIGDFDEMGIGERKKLSYVGHVAVNVVLDARYDI
VGDPDLVSIGLPVYDDEGEEMEDTLFDAAISAIESIPRARRKDIDMLQEAVRRAIRAAAN
HAWGKKPVVTAFVTKV
NT seq 1671 nt   +upstreamnt  +downstreamnt
atggcgaaacaggacgagttggtattcctgcctctgggcggcgttggcgagatcggcatg
aatctcgctctctatggctacggcccgcccgagcatcgccaatggatcatggtcgattgc
ggcgtcacctttccaggtcccgacctgccgggcgtcgacctcgtgctgcccgatatccgc
ttcctcgccagcgagcgcaagaatctcaaggcgatcatcatcacccatgcgcatgaagat
cactatggcgcgctcgccgatctctggccggggctcaacgtgccggtctatgcctcgggc
tttaccgctggtctgctcgaagccaagcgcaatttcgagaaggcgacgatcggcgaagtg
ccggtgacgccgttcaaggcaggcgacacgatcaatgtcggccccttcagcatcgagggt
gtggccgtcaaccattcgatccccgagccgatgtcgctgatgatccgcacgccggccggc
aacgtgatccacaccggcgactggaagatcgaccacgagccttcgctcgggccgctgacc
gatgagacgcgtttccgccagctcggcgacgagggcgtgctggcgctgatgtgcgattcc
accaatgcgctgcgcgacggtgtttcgccctctgagaaggatgtgtccgaaagcctgcgc
aagatcatcgagaatgccgagggccgggtggcgatcaccaccttctcgtcgaatgtcggg
cgtatccgcaccgtcgccgaagccgccgaggcggcaggccgcgaagtgctgctgcttggc
agttcgctgaagcgcgtcgtcaacgtcgcccaggacatcggcctgatggaaggcgtaaag
cccttcatctctgaagatgaatacggctatatcccgcgcgacaaggtcgtcgtcatcctg
accggcagccagggcgaggctcgggcagcgcttgccaaactctcgcgcgacgagatgcgc
aatgtggcctttgccgcaggcgatatcgtcgtcttttcctcgcgcgccattcccggcaac
gagaaggcgatccaggacattaagaacggccttgtcgagcagggcgtgcacatcatcacc
gataccgaagccctggtccacgtgtccggccatccgcgccgcaacgagttacagcggatg
tatgagtggacgcggccaaagatcgtcgtgccggtgcatggcgaagcgacgcatttgaca
gcgcataaggaacttgccgagcaatccggtatcgcgatcgtgccgcgcgtgcgcaatggc
gatatcctgcggctggcgcccggtcccgtcgaggtgatcggcgaggcgccgcatggccgc
atctataaagacggctcgctgatcggtgatttcgacgagatgggtatcggcgagcgcaag
aagctctcctatgtcggccatgtcgctgtcaacgtcgtgctcgacgcccgctacgacatc
gtcggcgatcccgatctcgtttcgatcggcctgccggtctatgacgacgagggcgaggag
atggaagatacgctcttcgacgccgcgatcagcgccatcgagagcattccgcgcgcccgc
cgcaaggatatcgatatgctgcaggaggccgtgcgccgcgccatccgcgcagctgcgaac
catgcctggggcaagaagcccgtcgtcaccgcctttgtgaccaaggtctga

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