Rhizobium binxianense: PO860_06350
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Entry
PO860_06350 CDS
T11088
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
rbin Rhizobium binxianense
Pathway
rbin03030
DNA replication
rbin03430
Mismatch repair
rbin03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
rbin00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
PO860_06350 (dnaE)
03430 Mismatch repair
PO860_06350 (dnaE)
03440 Homologous recombination
PO860_06350 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
rbin03032
]
PO860_06350 (dnaE)
03400 DNA repair and recombination proteins [BR:
rbin03400
]
PO860_06350 (dnaE)
Enzymes [BR:
rbin01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
PO860_06350 (dnaE)
DNA replication proteins [BR:
rbin03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
PO860_06350 (dnaE)
DNA repair and recombination proteins [BR:
rbin03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
PO860_06350 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
DUF655
HROB
Motif
Other DBs
NCBI-ProteinID:
WEA61483
LinkDB
All DBs
Position
1277291..1280788
Genome browser
AA seq
1165 aa
AA seq
DB search
MADTAKGSTGEATGGTPGFIHLRVHSAYSLLEGALPLKKILYKATGDSQPAIAITDTNNL
FVALEFSQKAMDEGLQPIIGCQVSIDMGDGLETEKRGGQQALVKLPSIVLLATTDAGYER
LVDLVSRAYLGGESNQAVHINASWLAEAGTEGLIALTGAPTGPVDMAIKEGHPAQAEARL
LLLKRLFGDRLYVELQRHGTYDKRHEQKIVGLAYAHDLPLVATNEAFFPTRDDYDAHDAL
MAVAHNAIVSDDSRFRLTPDHYLKSRAEMVKLFADLPEALENTIEIAKRCSFVLKTRKPI
LPRFTGATDDAEEAERAEASELRRQAVEGLDMRLATLGMSPGYEEKDYRERLDFELSVIE
RMRFPGYFLIVADFIKWAKQHDIPVGPGRGSGAGSLVAYALTITDVDPLRFSLLFERFLN
PERVSMPDFDIDFCQDRREEVIRYVQAKYGREQVAQIITFGSLQARAALRDVGRVLEMPY
GQVDKICKLVPNNPANPTPLSKAIEEEPKLQEEAAKEPVVARLLDIAQKIEGLYRHASTH
AAGIVIGDRPLSKLVPMYRDPRSDMPVTQFNMKWVEQAGLVKFDFLGLKTLTVLKVAVDF
VAKLGIKVDLAAIPLDDKKTYEMLSRGETVGVFQVESAGMRKALIGMKPDCIEDIIALVA
LYRPGPMENIPTYNARKHGDEELESIHPMIDHLLKETQGVIVYQEQVMQIAQVLSGYSLG
EADLLRRAMGKKIKAEMDQQRERFVVGAVKNGVSKPQADNIFELLAKFANYGFNKSHAAA
YAIVSYQTAYMKAHYPVEFLAASMTLDMSNTEKVNDFRQDAKRLGIEVIAPSVQTSFRHF
ETGDNRIYYALAALKGVGESAVDHIVEVRGDKPFAGIEDFCLRIDPRQVNRRVLESLIYA
GAFDCFDMDRAQLAAGLDRILGYAQRAQENKLSGQSDIFGSTLTTGPEKISLPPFSPWLP
SERLLKEFQVLGFYLTAHPLDSYSNILQKMRVQTFAEFSQAIKQGAANARLAGTVISKQE
RKTRTGNKMGIIVFSDSSGQFEAVLFSEMLNQYRDILESGKSFVLTATGEERPEGIGLRI
QTIQSLEEKSLQMQKALRVYIRDSGPLKMVAGHLNAKGDGLVSFIVIKEDGKREVEVALS
EKYRITPEIAAALRAAPGVVDVELV
NT seq
3498 nt
NT seq
+upstream
nt +downstream
nt
atggcggatacggcaaagggttcaacgggtgaggcgaccggcggcacgccgggtttcatc
cacctgagggtccattccgcctattcgcttcttgagggtgctctgcccctgaagaagatc
ctctacaaggcgaccggcgacagccagccggcgattgcgattaccgacaccaacaatctg
ttcgtcgccctcgaattctcccagaaggcgatggacgagggcctgcagccgatcatcggc
tgccaggtctccatcgacatgggagacgggttggaaacggaaaagcgcggcggccagcag
gccctggtcaagctgccgtcaatcgttcttctcgccacgacggatgcaggttacgaacgg
ctcgtcgatctcgtcagccgcgcctatctcggcggcgaaagcaaccaggccgttcatatc
aacgcctcctggctggcagaggccggcacggaagggctgatcgccttgaccggcgccccg
accgggccagttgacatggcgatcaaggaaggccatcccgcccaggcggaagcccggctg
ctcctgttgaagcgtctcttcggcgacaggctctatgtcgagctgcagcggcacggcacc
tacgacaagcggcacgaacagaagatcgtcgggctcgcctatgcccacgacctgccgctg
gttgcaaccaacgaggccttcttcccgacacgcgacgattacgacgcccatgatgcgctg
atggcggtcgctcacaacgccatcgtctccgacgacagccgctttcgtctgacgccggac
cactatctgaagagccgggccgagatggtcaagctcttcgccgacctgccggaagcgctg
gaaaatacgatcgagatcgccaagcgttgctccttcgtgctgaagacgcgcaagccgatc
ctgccgcgcttcaccggtgcgaccgacgacgccgaggaggccgaacgcgccgaggcgagc
gagttgcgccgccaggcggtcgaagggctggacatgcggcttgcaacgcttggcatgtcg
ccgggttacgaggaaaaggactatcgcgagcggctggatttcgagctcagcgttatcgag
cgcatgcgttttcccggttacttcctgatcgttgccgacttcatcaaatgggccaagcag
catgatattccggtcggcccgggccgcggttcgggcgccggctcgttggtcgcctacgcc
ttgacgatcaccgatgtcgatcccttgcggttttcgctgctgttcgagcgcttcctcaat
cccgaacgcgtctcgatgccggacttcgacatcgacttctgccaggaccgccgcgaagag
gtgatccgctacgtccaggccaagtatggccgcgagcaggtggcgcagatcatcaccttc
ggttcgctgcaggcgcgcgccgcccttcgcgacgtcggccgcgtgcttgagatgccctat
ggccaggtcgacaagatctgcaaactcgtgccgaacaacccggccaatccgacgccgctg
tcgaaggcgatcgaggaggagccgaagctgcaggaggaggcggcgaaagaacccgtggtc
gcgcgcctgctcgacatcgcccagaagatcgaggggctttaccgccacgcctcgacgcat
gccgccggcatcgtcatcggcgatcggccgctgtccaagcttgtgccgatgtatcgcgat
ccgcgctcggatatgccggtcacccagttcaacatgaaatgggtggagcaggcgggcctg
gtcaagttcgacttcctcggtctgaagacgctgacggtgctgaaggtcgccgtcgatttc
gtcgccaagctcggcatcaaggtcgatctcgcggccattcctctcgacgacaagaagacc
tacgagatgctgtcgcgcggcgagacggtcggtgtgttccaggtggaaagtgccggcatg
cgcaaggcgctgatcggcatgaagccggactgcatcgaggacatcatcgcgctggtggcg
ctctatcgtccaggcccgatggagaacatcccgacctacaatgcccgcaagcacggcgac
gaggagctggaatcgatccatccgatgatcgaccacctgctcaaggaaactcaaggggtt
atcgtctatcaggaacaggtgatgcagatcgcccaggtgctgtccggttactcgctgggt
gaagccgaccttctgcgccgcgccatgggcaagaagatcaaggccgagatggatcagcag
cgcgagcgcttcgtcgtcggcgccgtcaagaacggcgtctcgaagccgcaggccgacaac
atcttcgaactgctggcgaagttcgccaattacggcttcaacaagtcgcatgccgccgcc
tacgccatcgtctcctatcagacggcctacatgaaggcgcattatccggtcgaattcctc
gctgcctcgatgacgctcgacatgtccaatacggaaaaggtcaatgatttccgtcaggac
gccaagcgcttgggcatcgaagtgatcgcaccctcggtgcagacctccttccgccatttc
gaaaccggcgacaaccgcatctattacgcgctcgccgccctcaagggcgtcggcgaatcc
gccgtcgaccatatcgtcgaggtgcgtggcgataagccgttcgccggcatcgaagatttc
tgcctgcgcatcgatccgcgtcaggtcaatcgccgcgtgctcgaaagcctgatctatgcc
ggcgccttcgattgtttcgatatggaccgcgcccagctggcagccggcctcgaccgcatc
ctcggttatgcccagcgcgcccaggagaacaagctgagcggccagtcggacattttcggc
agtacgttgaccacggggcctgagaagatctccctgccgccgttctcgccctggctcccc
tccgagcggctgctcaaggaattccaggtgctgggcttttatctgacagcccacccgctc
gattcctacagcaacatcctgcagaagatgcgggtgcagacctttgccgaattttcccaa
gcgatcaaacagggcgcggccaatgcgcggcttgcaggcaccgtcatctccaagcaggag
cgcaagacccgcaccggcaacaagatgggcatcatcgtcttttcggattcgtccggccag
ttcgaagcggtgctgttttcggaaatgctgaaccagtatcgcgacattctcgagtcggga
aaatccttcgtgctgaccgcgacgggggaggagcggccggagggcatcggcctgcgcatc
cagacgatccagtcgctggaggaaaagtcgctgcagatgcagaaggcgctgcgcgtctat
atcagagattccggaccgctgaagatggtcgccggccatctgaacgccaagggcgacggc
ctcgtttccttcatcgtcatcaaggaggacggcaaacgcgaggtggaagtggcgctgtcg
gagaaataccgcatcaccccggagatcgccgccgcccttcgcgccgcccccggcgttgtc
gatgtcgagcttgtctga
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