Rhizobium binxianense: PO860_15030
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Entry
PO860_15030 CDS
T11088
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
rbin Rhizobium binxianense
Pathway
rbin03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rbin00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PO860_15030
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rbin03019
]
PO860_15030
Enzymes [BR:
rbin01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
PO860_15030
Messenger RNA biogenesis [BR:
rbin03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
PO860_15030
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
HEM4
NAT10_TcmA_helicase
AAA_22
Flavi_DEAD
ERCC3_RAD25_C
Motif
Other DBs
NCBI-ProteinID:
WEA62476
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All DBs
Position
3024834..3026573
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AA seq
579 aa
AA seq
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MVRSGDSHCGAPKGYTLTNFESLGVSKPIVATLFQLGIETPTPIQEQAIPLLLEGRDLIG
LAQTGTGKTAAFGLPLIEKLLADERRPDNRTTRTLILAPTRELVNQIAENLKKFIRKSPL
RINVVVGGVSINKQQLQLEKGTDVLVATPGRLLDLVNRRAITLTTVRYLVLDEADQMLDL
GFVHDLRKIAKLVPKKRQTMLFSATMPKAIADLAGEYLVDPITVEVTPPGKAADKVEQYV
HFVGGKNDKTELLRKSLTENPDGRAIVFLRTKHGAEKLMKHLENVGYSVASIHGNKSQGQ
RERALKAFRDGSIKTLIATDVAARGIDIPAVSHVYNYDLPEVPDAYVHRIGRTARAGRDG
IAIAFCAPDEAKLLRDIERLMGIDITVAGGEPPAHISSSGPRRGNGNGNNRNRGGGQGRE
SNGRGEGRGDQNRSEHRGSRQERRPRREGEGSEVRAGGDRRPRPERTARNEDFRGQRRGE
ATPNLAPDNDLVSTSDFRPAAKPQRPAHNGPNAHHANGEPSGHHRGNNRHAHGRPARKHG
EDRGPQQAQGGEPRRDGNGGNRRGGSGARNGGGQRRERA
NT seq
1740 nt
NT seq
+upstream
nt +downstream
nt
atggtgcgttccggcgatagtcattgtggcgccccgaaaggttataccttgactaatttt
gaatcgcttggtgtctccaagccgatcgttgccaccttgttccagctcggcatcgaaacg
ccgacgccgatccaggaacaggccattcctctcctcctcgagggccgcgacctgatcggc
cttgcccagaccggcaccggcaagactgccgctttcggcctgccgctgatcgaaaagctg
cttgccgacgaacggcgccccgacaaccgcacgacgcggacgctgatcctggctccgacc
cgcgaactggtgaaccagatcgccgaaaacctgaagaagttcatccgcaagtcgccgctg
cgcatcaatgtcgtcgtcggcggcgtctcgatcaacaagcagcagcttcagcttgaaaaa
ggcaccgatgtgctggttgccacacccggccgcctgctcgacctcgtcaaccgtcgcgcg
atcacgctgaccacggtgcgctatctcgtgctcgacgaagccgatcagatgctcgatcta
ggcttcgtccacgatctgcgcaagatcgccaagctggtgccgaagaagcgccagaccatg
ctgttttcggccaccatgccgaaggcgatcgccgatcttgccggcgaatatctggtcgat
cccatcaccgtcgaagtcacgccgcctggcaaggctgccgacaaggtcgagcagtacgtg
catttcgtcggcggcaagaatgacaagacggaactgctccgcaagtcgctgaccgaaaac
ccggatggccgcgccatcgtcttcctgcgcaccaagcacggtgcggagaagctgatgaag
catctcgagaacgtcggctattccgtcgcctcgatccacggcaacaagagccagggccag
cgcgaacgggcgctgaaggctttccgcgacggcagcatcaagacgctgatcgccaccgac
gtcgccgcccgcggcatcgacatcccggctgtcagccacgtctacaactacgacctgcct
gaagtgcccgatgcctatgtccaccgcatcggccgcacggcgcgcgccggccgcgacggc
atcgccatcgccttctgcgctcccgacgaagccaagctgctgcgtgatatcgagcgcctg
atgggcatcgacatcacggtcgcaggcggcgaaccgccggcccatatcagcagcagcggc
cctcgccgcggcaacggcaatggcaacaaccgcaatcgcggcggcggccagggtcgcgaa
agcaatggtcgcggcgaaggccgtggcgaccagaaccgttccgagcatcgcggcagccgc
caggaacgccgcccgcgccgtgaaggcgaaggtagcgaagtccgcgccggcggcgatcgt
cgtccgcgtcccgagcgcaccgcccgcaacgaggatttccgcggccagcgccgcggcgaa
gcgacccctaaccttgctcccgacaacgatctggtctcgacctccgatttccgccccgcg
gcaaagccgcagcgtcctgcccataacggccccaatgcccaccatgccaatggcgagccg
agtggtcatcaccgcggcaataaccgccacgcccacggccgcccggcccgcaagcatggt
gaagatcgcggcccgcagcaggcccagggcggcgaaccgcgccgcgacggcaacggcggc
aatcgccgcggcggctccggcgcccgcaatggcggcggccagcgccgcgagcgcgcctga
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