Rhodopseudomonas boonkerdii: E0H22_01875
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Entry
E0H22_01875 CDS
T07799
Symbol
addB
Name
(GenBank) double-strand break repair protein AddB
KO
K16899
ATP-dependent helicase/nuclease subunit B [EC:
5.6.2.4
3.1.-.-]
Organism
rbk
Rhodopseudomonas boonkerdii
Brite
KEGG Orthology (KO) [BR:
rbk00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rbk03400
]
E0H22_01875 (addB)
Enzymes [BR:
rbk01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
E0H22_01875 (addB)
DNA repair and recombination proteins [BR:
rbk03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
AddAB pathway proteins
E0H22_01875 (addB)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PDDEXK_1
CDK2AP
Motif
Other DBs
NCBI-ProteinID:
UGV24538
LinkDB
All DBs
Position
complement(399346..402537)
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AA seq
1063 aa
AA seq
DB search
MRVFTIPPSAPFLRTLVAALVDGTLIDGFSARDDREKLATVTLYLPTRRAGRMAQEAFLD
VLGGDAVLLPRIVPLGDVDEEELVFAHAAAPETLDLPDMPRALDGLQRRLLLAQLIGAWA
KRLAPGDPAQAPLVVGGPASTLALADDLGRLMDDMATRQVKWSALDGLVPDALDRYWQLT
LQFLSIAREVWPNIMTAHDAIEPAVRRDLLIDAEAARLKAHKGGPIIAAGSTGSMPTTAK
FLHAVAQLPHGAVVLPGLDTDLDEASWQLIGGSRDVLGFVESSASNHPQYALHALLERFD
IKRSDVTVLGTPSPHGRELLASEAMRPSNATAQWHQRLAEPVVQQKIAAGMTKLSVIAAA
NPEMEALSIAIAMREAHEQNKSAALVTPDRALARRVMAALGRWNLLFDDSGGDSLTETSA
GIFTRLVAEAAAEQFEPATLLALLKHPLFRLGKQAYGWKDAIETLELALLRGTRPAPGTA
GLKQDFARFRDELGKLHRREASMLHAAEPRAKLAGERLDRTEDLIAELQTALAPLESIHP
TRPIDFAEVARRHREAIERLSRDDKGGAIALAGRTGGNALANAFEDLCVMETPEDGGADR
LRLSGLTLQLRDYPEVFQTAFGDRIVRRPEVADAKLRIFGQLEARLTQSDRVILGGLVEG
VWPPSPRIDPWLSRPMRNQLGLDLPERRIGLTAHDFVQLLGHDEVILSHAAKVGGAPAVA
SRFLHRLEAVAGEDRWAAAVKAGETYVRYAETLDQPDKVTPITQPEPKPPLIARPLRLSV
TAIEDWLRDPYSIYAKYILGLAPLDPVDMPLSAADRGSAIHNAIGDFTLEFSKALPPDPA
AALRNIGKAHFAPLMNRPEAQALWWPRFLRIASWFANWEIERRINVASIDAEVGGEIRIP
LDQGRIFTLTARADRIEHRTDRTFALLDYKTGNPPTGKQVRMGLSPQLTLEAAILREGGF
PGIAAGSSVSELTYVRLSGNNPPGEERPIELRIERKDEPQHPDDAAIEARARLEGLIRKF
EDETQGYTSLALSMWSNRYGTYDDLARIKEWSANGGTSGGAEA
NT seq
3192 nt
NT seq
+upstream
nt +downstream
nt
atgcgcgttttcaccattccaccttccgcgccgtttctgcgcacgctggtcgcggcgctg
gtggatggcacgctgatcgatggcttctcggcgcgcgatgatcgcgaaaagctcgccacc
gtcacgctgtacctgccgacgcggcgcgcgggacgcatggcgcaggaagcgtttctcgac
gtgcttggcggcgatgccgtgctgttgccacgcatcgtaccgctcggcgatgtggatgaa
gaagaactcgttttcgcgcacgcggcggcgcccgagacgctggacctccccgacatgcca
cgcgcgctcgatggcctgcagcgccgcctgctgctggcgcaactgatcggcgcctgggcc
aagcggctcgcgcccggcgatcccgcacaggcaccgctggtggtgggcggccccgcctct
acactcgcgctggccgacgatctggggcggctgatggatgacatggcgacacgccaggtc
aagtggagcgcgctcgacggcctcgtgcccgatgcgctcgaccgctactggcaactgacg
ctgcaattcctttccatcgccagggaggtgtggccgaacatcatgacggcgcacgacgcc
atcgagccggcggtgcggcgcgacctcctgatcgatgcagaagcggcgcggctgaaggcg
cacaaaggcgggccgattatcgccgcaggctccaccggctcgatgccgaccacggcgaag
tttttgcacgcagtggcgcagcttccgcacggcgccgtggtgctaccgggcctcgacacc
gatctggacgaggcctcgtggcagctgatcggcggcagcagggacgtgctgggcttcgtc
gaatcctctgcatcgaaccatccgcaatatgcgctgcatgcgctgctggaacgtttcgat
atcaagcgcagcgatgtgaccgtcctcggcacgccttcgccacatgggcgcgaattgctg
gcttcggaggcgatgcggccgtccaatgcgacggcgcaatggcatcagcgccttgccgag
cccgtcgttcagcagaagatcgctgcgggcatgacgaaactctctgtcattgccgccgcc
aatccggaaatggaagcgctcagcatagcgatcgcgatgcgcgaggcccatgagcagaac
aaatccgccgcgctggtgacgccggatcgcgcgctggcgcggcgcgtgatggcggcattg
ggacgctggaacctgttgttcgacgattccggcggcgattcgctgaccgaaacatctgca
ggcattttcacgcgactcgttgccgaggctgcggccgaacagttcgagccggcaacgctg
ctcgcgctgctgaaacatccgttgtttcggctcggcaagcaggcatacggctggaaggac
gctatcgaaacgctggagctggcattgctgcgcggcacgcgaccggcgccgggcactgcg
ggactcaaacaggatttcgcgcgtttccgcgacgaactcggcaagctgcatcgccgtgag
gcctcgatgttgcacgcggcagagccgagggcgaagctcgctggcgagaggctcgaccgt
accgaagatctgatcgcggaactgcagacggcgctggcgccgctggagagcatccatccg
acccgccccatcgatttcgccgaggtcgcaaggcgacaccgcgaggcgatcgagcgattg
tcgcgcgacgacaaaggcggcgccattgcgctggccggccggacaggtggcaatgcgcta
gcgaacgcgttcgaagatctctgcgtcatggagacgccggaggatggcggcgcggaccgg
ctgcgcctctccgggcttacgctgcaactgcgcgactacccggaagtgtttcagaccgcc
ttcggcgatcgcatcgtgcgacggccggaggtcgccgatgccaagctccgcatctttggt
cagctcgaggcacgtctcacacaatccgatcgcgtcattctcggcggccttgtcgagggt
gtctggccgccgtcgccacgaatcgacccgtggctgagccggccgatgcgtaaccagctc
ggcctcgacctgccggagcgccgcatcggcctcaccgcccacgacttcgtgcagttgctc
ggccatgacgaagtgatcctcagccatgccgcaaaggtcggcggtgcgccggcggtcgcc
tcgcggttcctgcatcgcctggaagcggtggcgggcgaggaccgctgggcagccgcggtc
aaggccggcgagacctatgtgcgctatgctgaaacgctggaccagcccgacaaggtcacg
ccgatcacgcagccggagccgaagccgccactgatcgcgcggccgctgcgcctctcggtc
actgccatcgaggactggctgcgcgatccctattcgatctatgcgaaatacattctcggt
ctcgcgccgctcgatcccgtggacatgccgctgtccgccgccgatcgcggctcggcgatc
cacaatgcgatcggcgatttcacgctggagttcagcaaggcgctgccgcccgaccctgct
gcggcgcttcgcaacatcggcaaagcgcatttcgctccactgatgaaccgcccggaggcg
caagcgctgtggtggccgcggttcctgcgcatcgcatcctggtttgcgaactgggagatc
gaacggcgtatcaatgttgccagcatcgatgcggaagtgggaggcgaaatcaggattccg
ctcgatcaaggccggatctttacgctgacagcgcgcgccgaccgtatcgagcatcgcacg
gaccgcaccttcgcgctgctcgactacaaaaccggcaatccgccaacgggcaaacaggtg
aggatggggctgtcgccgcagctcacgctggaagccgcgatcctgcgcgaaggcggcttc
ccgggcattgccgcaggcagctcggtgagcgaactcacttatgttcgcctcagcggcaac
aacccaccaggtgaggaacgtcccatcgagctgcgtatcgagcgcaaggacgagccgcag
catcccgacgatgccgcgatcgaggcgcgcgcacgtctcgaaggcctcattcgaaaattc
gaggacgaaacgcagggctacacatccctcgcgctgtccatgtggtcgaaccgctacggc
acctatgacgatctcgctcgcatcaaggagtggtccgccaatggcggcacctccggggga
gccgaggcatga
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