KEGG   Rhodopseudomonas boonkerdii: E0H22_03080
Entry
E0H22_03080       CDS       T07799                                 
Name
(GenBank) ligase-associated DNA damage response DEXH box helicase
  KO
K03724  ATP-dependent helicase Lhr and Lhr-like helicase [EC:5.6.2.6 5.6.2.4]
Organism
rbk  Rhodopseudomonas boonkerdii
Brite
KEGG Orthology (KO) [BR:rbk00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:rbk03400]
    E0H22_03080
Enzymes [BR:rbk01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     E0H22_03080
    5.6.2.6  RNA 3'-5' helicase
     E0H22_03080
DNA repair and recombination proteins [BR:rbk03400]
 Prokaryotic type
  Other factors with a suspected DNA repair function
   DNA helicases
    E0H22_03080
SSDB
Motif
Pfam: DEAD_assoc WHD_Lhr DEAD Helicase_C ResIII Cas3-like_C_2
Other DBs
NCBI-ProteinID: UGV24755
LinkDB
Position
complement(666997..669552)
AA seq 851 aa
MGLVSPRQSIAKTDLLPPTFTRWFTQRGWSPRTHQIALLEKAHADRSVLLIAPTGAGKTL
AGFLPTLVELSDRANAVRPAGRDVQRTAGLHTLYISPLKALAVDIARNLETPIAEMKLPI
KVETRTGDTPVSRRTRQRKYPPDILLTTPEQLALLLSSDDAPFLFSSLKRVVLDELHALV
TSKRGDLLSLGLARLWKLAPDMRAIGLSATVAEPESLARFLVPQPVGESVSADIVVAGGA
AEPVVEMLDTKERLPWAGHSARHALGEIYDLIKANKTTLVFVNTRSQAEMLFQDLWRVND
DGLAIALHHGSLDVGQRRKVEDAMTAGRLRGVVCTSSLDLGIDWGDVDLVVNVGAPKGSS
RLMQRIGRANHRIDVPSRAVLVPANRFEVLECRAAIDAVAENAQDTPPLRTGALDVLAQH
VLGCACGAPFLADELYDEVRSVAPYSELSRTDFDDTVDFVATGGYALKTYERFARIKQDK
SGKWRVANPKVRQMYRMNVGTIVEEAMLKVRLVRARGTGKGSTGTIARGGRMLGQIEEYF
IENLLLGDTFVFGGEVVRYEALVEDQVYVSRSNDSDPKVPSYMGGKFPLSTYLAERVRKL
LDDERAWKALPDQVREWLSLQAHVSHVPGVRELMVETFPRANKFYLACYPFEGRLAHQTL
GMLLTRRLERARARPLGFVANEYALAVWGLGDVAHMIRQGRLDLAALFDPDMLGDDLEAW
LAESALMKRTFRTCAVVSGLIHTRFTDAEKSRRQVLFSTDLIYDVLRKHQPDHLLLRAAR
ADAATGLLDLRRLSDMLTRIQGHIVYRELDRVSPLAVPVMLEIGREQVYGEASDALLAEA
AEELVKEAMES
NT seq 2556 nt   +upstreamnt  +downstreamnt
attggtcttgtgtcgccgcgtcaatccatagccaaaaccgatctcctgccaccgaccttc
acccgctggttcacccagcggggctggtcgccgcgtacccatcaaattgcgttgctggag
aaagcccacgccgatcgttccgtcctgctgatcgctccgaccggcgccggcaagacgctg
gcaggttttctgccgacattggtggagctgagcgacagggcaaacgccgtccgtcccgcc
ggccgcgatgtgcagcgaaccgccggattgcatacgctctacatctccccgctcaaggct
ctcgccgtcgatatcgcacgcaatctggaaacgccgattgccgagatgaaactgcccatc
aaggtggagacccgcaccggcgacacgccggtgtcacgtcgcacacggcagcggaaatat
ccgccggacatcctgctcacgacgccggagcaactggcgctgctgttgtcatcggacgat
gctcctttcctgttctcgtcgctgaagcgtgtggtgctcgacgagctgcatgcgctcgta
acatccaagcgcggcgacctgctgtcgctcggcctcgcacgactatggaaactggcgccc
gacatgcgcgccattggtctttccgccacggtcgccgaaccggagtcgctggcgcgtttc
ctcgtgccgcaacccgtcggcgaaagcgtctccgccgacatcgtcgtggccggcggcgca
gccgagcccgtggtggagatgctcgacaccaaggagcgcctgccctgggccgggcattcc
gcgcgccatgcgcttggcgagatctacgacctcatcaaggccaacaagaccaccctcgtc
ttcgtcaatacccgcagccaggccgagatgctgttccaggatctctggcgcgtgaatgat
gacggcctcgccatcgccctgcatcacggctcgctcgacgtcgggcagcgccgcaaggtg
gaggatgccatgaccgccggcaggctgcgcggcgtggtgtgcacctcctcgctcgatctt
ggcatcgactggggcgacgtcgatctcgtggtcaatgtcggcgcgcccaaaggctcgtcg
cggttgatgcagcggatcggccgtgccaatcaccgcatcgacgtcccctcgcgcgcggtg
ctggtgccggcgaatcgcttcgaagtgctggaatgccgcgccgccatcgatgccgtggcg
gagaatgcgcaggatacgccgccgctgcgcaccggcgcgctcgatgtcctcgcacagcat
gtgctcggctgcgcctgcggagcccccttcctcgcggatgaactctatgacgaagtgcgc
tcggtggctccctattcggaactctcgcggaccgacttcgacgacaccgtcgatttcgtc
gctaccggcggctatgcgctgaagacctatgagcgttttgcgcggatcaagcaggacaaa
tctggcaaatggcgtgtcgccaatccgaaggtgcgccagatgtatcgcatgaatgtcggc
accattgtcgaggaagcgatgctcaaggtccggctggtacgcgcgcgcggcaccggcaag
ggatcgaccggcaccatcgcgcgcggcggacgaatgctcgggcagatcgaggagtatttc
atcgagaatctcttgctcggcgatactttcgtgttcggcggcgaggtggtgcgttatgaa
gctctggtcgaggatcaggtctatgtctcgcgctccaacgacagtgatccgaaagtgccg
tcctacatgggcggcaagttcccgctctcgacctatctcgccgaacgcgtacgaaaactg
ctcgacgatgaacgggcgtggaaggccctgcccgatcaggtgcgcgaatggctgtctttg
caggcgcatgtctcccatgtgccgggcgtgcgcgagctgatggtggaaacctttccgcgt
gccaataaattttacctcgcctgctatccgttcgaaggccggctcgcgcatcagacattg
ggcatgttgctgacacgccggttggagcgggcgcgggcgcggccgctcggcttcgtcgcc
aatgaatatgcactggcagtctgggggctcggcgatgtcgcgcacatgatccgacagggc
cgtctcgatctcgcagcgttgttcgacccggacatgctgggtgacgatctagaagcgtgg
cttgccgagtctgcgctgatgaagcgtacattccgcacctgcgccgtcgtctccggcctg
atccacacgcgcttcaccgatgcggagaagtcacgccggcaggtcctgttctcgacggac
ctgatctatgacgtgctgcggaaacatcagcccgatcacctgctgctgcgcgccgcgcgt
gcggacgccgcgaccggcctgcttgatctccgacgcttgagcgatatgctgacccgcatc
caaggtcacatcgtctatcgggaactcgatcgcgtttcaccgctcgcggttcccgtgatg
ctggagatcggccgcgagcaggtctatggcgaggcctccgacgcgctgctggcagaagca
gccgaggaactcgtgaaggaagcgatggagtcgtag

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