Rhodopseudomonas boonkerdii: E0H22_04565
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Entry
E0H22_04565 CDS
T07799
Symbol
recQ
Name
(GenBank) DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
rbk
Rhodopseudomonas boonkerdii
Pathway
rbk03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rbk00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
E0H22_04565 (recQ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rbk03019
]
E0H22_04565 (recQ)
03400 DNA repair and recombination proteins [BR:
rbk03400
]
E0H22_04565 (recQ)
Enzymes [BR:
rbk01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
E0H22_04565 (recQ)
Messenger RNA biogenesis [BR:
rbk03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
E0H22_04565 (recQ)
DNA repair and recombination proteins [BR:
rbk03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
E0H22_04565 (recQ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
HRDC
DEAD
Helicase_C
RecQ_Zn_bind
Fic-like_C
ResIII
zf_Hakai
Peripla_BP_4
Motif
Other DBs
NCBI-ProteinID:
UGV25012
LinkDB
All DBs
Position
complement(987337..989193)
Genome browser
AA seq
618 aa
AA seq
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MPVSGIARQSAAPSDPLGADALARLRSTFGLPGFRGEQEKIVRHVTDGGNCLVLMPTGGG
KSLCYQLPSLLREGCGIVVSPLIALMRDQVAGLLELGVNAAVLNSTLSWEEANEVERRLR
AGDLDLLYVAPERLVTPRCLAMLEQTDIALFAIDEAHCVSQWGHDFRPEYIGLSVIAERF
PQIPRIALTATADDLTREEIAQRLGLTDAPRFISSFDRPNIKYEIVDKTNSQKQLQAFIN
ERHPNDAGVVYCLSRAKVEDTAAALNKAGILALPYHAGLDARIRESNQDRFINEDGVIIV
ATVAFGMGIDKPDVRFVCHLDLPKSVEAYYQETGRAGRDGKPSTAWMAYGLQDIVQQRRM
IDESNGSDAFKRVSIGKLDALVGLAETVDCRRGRLLRYFGEETAGTSCGNCDNCVSPPKL
WNGSVAAQKLLSCAYRTGQRFGAMHLIDVLIGRLTDKVKQFGHDRLSVFAIGSELNEKQW
RAVMRQLVARGFLYADAEHFNALMLTESARGVLRGEVELMFREETGRIRAPRKHARRGEL
ASPRADNADADLVSRLRAWRAGIARERNVPAYVVLHDATIDVIASEHPTTMSQLREVPGI
GDKKLEHYGANILAIVNR
NT seq
1857 nt
NT seq
+upstream
nt +downstream
nt
atgcccgtttccggtattgcgcgtcagtccgctgctccgtccgacccgctcggcgccgat
gccttggcgcggctgcggtcgaccttcgggctgcccgggttccgcggcgagcaggagaaa
atcgttcgccacgtcaccgatggcgggaactgcctcgtgctgatgcccaccggcggcggc
aaatccctatgttaccagctgccctccctactgcgcgaaggctgcggcatcgtggtatcc
ccgctgatcgccttaatgcgcgatcaggtcgcaggcctgctcgaactcggcgtcaatgcg
gcggtactcaattccactctgtcgtgggaagaggccaacgaagtggagcggcgcctgcgc
gccggcgatctcgatctgctctatgtggcgcccgaacgcctggtgacaccgcgctgcctc
gccatgctagaacagaccgacatcgcgctgttcgccatcgacgaggcacattgcgtgtcg
cagtgggggcacgacttccgtccggaatatatcggcctgtcggtcattgccgagcgcttc
ccgcagattccgcgaatcgcgctgaccgcgaccgccgacgatctcacccgtgaggaaatc
gcccaacgcctcggcctcaccgacgcgccgcgcttcatctccagtttcgaccggcccaac
atcaaatacgagatcgtcgataagacgaattcgcaaaagcagttgcaagcctttatcaac
gagcgccacccgaacgatgccggcgtggtctattgcctgtcccgcgccaaggtcgaggac
accgccgctgcgctgaacaaggctggcattctggcgctgccctatcatgccggcctcgat
gcgcgcatccgcgagagcaatcaggaccgcttcatcaatgaggacggtgtgatcatcgtc
gccaccgtcgccttcggcatgggcatcgacaagccggacgtacgctttgtctgccatctc
gatctgccgaaaagcgtcgaggcctattatcaggagaccggccgcgccggtcgcgacggc
aagccgtccacggcatggatggcttacggcctgcaggatatcgtgcagcagcgccgaatg
atcgatgaatccaatggctcagatgcgttcaagcgtgtctccatcggcaagctcgatgcg
cttgtcggcctcgccgagactgtggattgccgacgcggacggctgctgcgttatttcggc
gaggaaaccgccggcacaagttgcggcaactgcgacaactgcgtctcgccgcccaaactc
tggaacggctcggtcgccgcgcaaaaattactctcctgcgcctatcggaccgggcagcgc
ttcggtgccatgcatctgatcgacgtgctcattggtcgactcaccgacaaggtgaagcag
ttcggccacgacagactgtcggtcttcgccatcggctccgagctcaacgagaagcaatgg
cgcgccgtgatgcggcagttggtggcgcgcggctttctctatgcggatgccgaacatttt
aacgcgctcatgctgaccgaaagcgcgcgtggtgtgctgcgcggcgaagtggagctgatg
tttcgcgaggagaccggccgcatccgcgcaccgcgcaaacatgcgcgccgcggcgaactg
gcctcgccacgtgccgacaatgccgatgcagatcttgtctcacgcctgcgcgcctggcga
gccggcatcgcacgcgagcgcaatgtgccggcctatgtggtgctgcatgatgcgaccatc
gatgtgattgcgagcgaacatccgaccacaatgagccagcttcgcgaggtcccgggaatc
ggcgacaagaaactggaacattacggcgcgaacattctggcgatcgtgaacaggtaa
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