Rhodopseudomonas boonkerdii: E0H22_08055
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Entry
E0H22_08055 CDS
T07799
Symbol
ligD
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
rbk
Rhodopseudomonas boonkerdii
Pathway
rbk03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
rbk00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
E0H22_08055 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rbk03400
]
E0H22_08055 (ligD)
Enzymes [BR:
rbk01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
E0H22_08055 (ligD)
DNA repair and recombination proteins [BR:
rbk03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
E0H22_08055 (ligD)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
RNA_ligase
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
UGV25643
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All DBs
Position
1730897..1733665
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AA seq
922 aa
AA seq
DB search
MRPPTRYNCLQRRSFARVELQRKLSVLVPSYPVAFGVCIVADRQLSIYRKKRDFAQTREP
SGKIVVTPAKRPRFVIQKHDATRLHYDLRLEMDGVFKSWAVTRGPSLDPADKRLAVEVED
HPLDYGDFEGTIPKGQYGGGTVQLWDRGYYDAEDAAKGLKKGDLKFTLDGEKLHGGFVLV
RMRRDRNGGKRANWLLIKHRDDYAVDGDGEAILDGDASVASGRSMEDIAEGKGRAPKPFM
IGKRAKIRKDAVWDSSEGEAAEARTRKGGRTKAGVARKAKKAVTIPGFVAPELCISVDRP
PAAAGWVHEIKFDGYRMQLRVETGEATLKTRKGLDWTDSFPVIAEEAGNLPDCMIDGEIV
GLDSGGAPDFAALQAALSDGETDTLIFFAFDLLFADGEDLRRLPLSERKSRLKTLLSQAR
GRRKEGLIRYVDHFESGGDAILQSACKLSLEGIVSKKLAARYTSGRSSNWTKAKCRAGHE
VVIGGWKTTKGKFRSLLAGVNKGDHLAYVGIVGTGYGADKVKRIMPALKKAAAERSPFGG
ENAPAGGRDVHWLKPELVAEIEFAGFTDSGMVRQASFKGLRQDKPAEEVEAEKPKKTALA
EPKPRRGRTRKAAKKTVSRSVAGKSAEVMGVTLSHADKALWPDIDDGGAVTKRDLAEYFE
AVGGWMMPHLKGRPCSVVRAPDGIDGQQFFQRHAMAGTSSLLELVKVSGDRKPYLQIDRI
EGLAAVAQMGGLELHPWNCAPGEPDVPGRLVFDLDPSPEVTFTDVIAAARELNERLSALG
MESFCKTTGGKGLHVVVPLKYGVRDRVDWKIAKTFAQTICQQMAGDDPERYLVNMSKAKR
KGRIFLDYLRNDRMSTAVSVLSPRARKGATVSMPVTWAQVRGNLDPRKYTLRSVPGLLKR
SKAWMDYEKAASSIKAAIGKMK
NT seq
2769 nt
NT seq
+upstream
nt +downstream
nt
atgcgtcctccaactcggtacaattgcttgcaacgccgatcgtttgcgcgtgtggaactt
caacggaagctctccgttttggttccatcctacccggtggcctttggagtatgcatcgtg
gccgatcgccaactatcgatttaccgcaagaagcgcgattttgcgcagacccgggagccg
tccggcaagatcgtggtcacgccggcgaagcgaccgcgcttcgtgatccagaaacacgat
gccacgcggctgcactatgacctgcggctggagatggatggcgtgttcaagtcctgggcg
gtgacgcgcgggccctccctcgatcctgccgacaaacggctggcggtggaggtcgaggac
catccgctcgattacggtgatttcgaagggacgatcccgaagggacagtatggcggcggc
acggtgcagctctgggaccgtggctattacgacgcggaagatgcggccaagggtcttaag
aagggcgatctgaagttcacgctggacggcgagaagctgcatggcggcttcgtgctggtc
cggatgaggcgcgaccgcaatggcggcaaacgcgccaactggctgctgatcaagcatcgg
gacgactatgccgtggatggcgacggagaggcgatcctggacggggacgcgtcggtcgct
tcggggcgcagcatggaagatattgccgaaggcaaaggacgtgcgccaaaaccgttcatg
attggcaagcgcgcgaagatcagaaaagatgccgtctgggattccagcgagggcgaggcg
gcagaagcgcgcacccggaagggaggccgaaccaaagcaggtgtggcgaggaaggcgaag
aaggcggtgacgataccgggcttcgtcgctccggaactgtgcatttcggtggaccgcccg
cccgcggccgcgggctgggtgcatgagatcaagttcgacggttaccgcatgcagcttcgc
gtcgaaaccggcgaagcgacactgaagacacggaagggactcgactggaccgacagtttt
ccggttattgcggaggaagccggcaatttgccggattgcatgatcgatggtgagatcgtg
ggactcgacagcggcggtgcaccggatttcgctgcattacaggcggccctgtccgatggt
gaaaccgatacgctgatctttttcgcattcgacctgttgttcgccgatggcgaagacctg
cgcagactgccgctgtcggaacggaaatcgcgcttgaagacattgttgtcgcaagcgcgc
ggtcgccggaaggaaggcttgattcgttatgtcgatcatttcgaatccggcggcgatgcg
atcctgcaatcggcctgcaagctgtcgctggaaggtatcgtgtcgaagaagctcgccgct
cgctatacgtccggccgctcgtcgaactggaccaaagccaagtgtcgtgcaggacatgag
gtggtcatcgggggctggaagaccaccaagggcaagttccgttcactgcttgccggggtc
aacaaaggcgatcatctcgcttatgtcggcattgtcggcacaggttatggtgccgacaag
gtcaaacgtatcatgccggcattgaagaaggctgccgcggaacggtcgccgtttggtggc
gagaatgcgccggcgggcgggcgtgatgtgcattggctcaagccggaactcgtggccgag
atcgaattcgccggcttcaccgactccggtatggtgcgccaggcatcgttcaaaggattg
cgtcaggacaagccggcggaggaagtcgaggccgagaagccgaagaaaacagcgctcgct
gagcccaagccgaggcgtggcagaaccaggaaggcagccaaaaaaacagtgtcgagatcg
gtcgcgggaaaatccgcggaggtgatgggcgtcacgctctcgcatgccgacaaggcgctt
tggccggacatcgatgacgggggagccgtcacgaagcgggatctcgccgaatatttcgag
gcggtgggcggctggatgatgccccatctgaaggggcggccatgctccgtggtgcgcgcg
cccgacgggatcgacggtcaacaattctttcaacgccatgccatggccggcacatcgagt
ttgctggagctcgtgaaggtgtcgggcgatcgcaagccgtatctgcagatagaccgtatc
gaggggcttgcggcggtcgcgcagatgggcgggctcgagcttcatccatggaactgcgcg
ccaggcgagcccgatgtgcccggccgtttggtcttcgatctcgatccttcgccggaggtg
acgtttaccgacgtgatcgctgcagctcgagagctgaacgagcgactatccgcactgggc
atggaaagcttttgcaagaccaccggcggcaaaggtctgcatgtggtcgtaccgttgaag
tatggtgtgcgagatcgcgtcgactggaagatcgcaaagacatttgctcagaccatctgc
cagcagatggcgggagatgaccccgagcgctatctcgtcaacatgtcgaaagcgaagcgg
aaggggaggatctttctcgattatctgcgcaacgatcgcatgtcgacagcggtatcggtg
ctgtcaccacgggcgaggaagggcgccacggtgtcgatgccggtgacgtgggcgcaggtg
cgcggcaatctcgatccgagaaaatacacgctgcgcagcgtgccggggctgctaaaaagg
agcaaggcctggatggattacgagaaagccgcgtcgtcgatcaaggcagcgatcgggaag
atgaagtag
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