Rhodopseudomonas boonkerdii: E0H22_12825
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Entry
E0H22_12825 CDS
T07799
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
rbk
Rhodopseudomonas boonkerdii
Pathway
rbk03030
DNA replication
rbk03430
Mismatch repair
rbk03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
rbk00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
E0H22_12825
03430 Mismatch repair
E0H22_12825
03440 Homologous recombination
E0H22_12825
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
rbk03032
]
E0H22_12825
03400 DNA repair and recombination proteins [BR:
rbk03400
]
E0H22_12825
Enzymes [BR:
rbk01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
E0H22_12825
DNA replication proteins [BR:
rbk03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
E0H22_12825
DNA repair and recombination proteins [BR:
rbk03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
E0H22_12825
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
HROB
HHH_3
DUF655
T2SSK
Amidohydro_1
Motif
Other DBs
NCBI-ProteinID:
UGV28962
LinkDB
All DBs
Position
2790192..2793653
Genome browser
AA seq
1153 aa
AA seq
DB search
MSTPGFVHLHVHSAYSLLKGSIKVAKLADLAKADHQPALALTDMDNMFGALEFSEKLAGS
GIQPIVGVELAVDFGDQDPNARNALNIVQPRMVFLATRERGYQSLMRLNSRAFLETPVHQ
TPHIKLDWLKDEAECVIALTGGPDGPLSQALIADQAALAAQRCEQLAGLFGDRLYIELQR
HNIEKERRAEAGLIDLAYTKGLPLVAANEPYFATAEDHEAHDALLCIAGGRIIAESDREQ
LTPDHRFKTRAEMAVLFADIPEALASTVEIAERCAYRPRTRKPILPRFTVGAGSNAEAAA
QEETDELRRQAVEGLERRLKVHGLSQGRSEEDYRSRLDFELSVIARMNYAGYFLIVSDFI
KWAKSQGIPVGPGRGSGAGSLVAWVLTITDLDPLQFNLLFERFLNPERVSMPDFDIDFCQ
DRRGEVISYVQERYGRDQVAQIITFGTLQARGVLRDVGRVLQMPYGQVDKLTKLVPQNPA
APVTLKQAIEDEPKLQAARDEDPIVAKAFDIAQKLEGLTRHASTHAAGIVIGDRPLSELV
PMYRDPKSDMPVTQFNMKWVEPAGLVKFDFLGLKTLTVLDVACKLLKQRDIHVDLATTPI
TDAASYEMLARGEVVGVFQVESAGMRRALVDMRPDRFEDIIALVALYRPGPMANIPTYCA
RKHGDEEPEYLHPIIEPILKETFGVIIYQEQVMQIAQVMAGYSLGDADLLRRAMGKKIRA
EMEKQREIFVAGSVKNGVPKGQADTIFDLLAKFADYGFNKSHAAAYALVSYHTAYMKAHY
PVEFIAASMTLDMSNTDKLSEFRAEAQRLGIKVEAPNINRSGVVFEVGENTIYYALAALK
GVGAAAVEQIVAERNRNGLFTSLADFASRVSPKAVNKRIIETLAAAGAFDTLDPHRARVH
GGADSILAACQRANEAATSGQNDMFGGATDAPTVMLPQIDNWLAAEKLRKEYDAIGFFLS
GHPLDDYATALKRLRVQSWADFCKAVKTGATAGKVAATVVSRQERRTKTGNKMGIMGLSD
PTGHFEAILFSEGLAQYRDVLEPGAAVLLQLGAELQGEDVRARVIHAEPLDAAAAKTQKG
LRIVMKDTKALDSLEKRLQRQIGPGNGGGDVSIVLRLDLQTEVEFKLDGRFVVSPQIAGA
IKAVTGVEMVETL
NT seq
3462 nt
NT seq
+upstream
nt +downstream
nt
gtgtccacacccggcttcgtgcatctgcacgttcattcggcctattcgctgctgaagggc
tccatcaaggtcgccaagctcgccgacctcgccaaggccgaccaccagccggcgctggcg
ctcaccgacatggacaacatgttcggcgcgctggagttctccgagaagctggccggctcc
ggcatccagccgatcgtcggcgtcgagctcgccgtcgatttcggcgatcaggacccgaac
gcccgcaacgcgctcaacatcgtgcagccgcgcatggtgtttctcgccacccgcgagcgt
ggctatcagagcctgatgcggctcaattcgcgcgctttcctcgaaacgccggtccaccag
accccgcatatcaagctcgactggctgaaggacgaggccgagtgtgtgatcgcgctcacg
ggcggtccggacggtccgttgtcgcaggcgttgatcgccgatcaggccgcgctcgccgcg
cagcgctgcgagcagcttgccggactgttcggcgatcgcctctatatcgaattgcagcgc
cacaatatcgagaaggaacgccgtgccgaagcggggttgatcgacctcgcttacaccaaa
ggcctgccgctggtcgctgcgaacgagccgtatttcgcaaccgccgaagatcacgaggcg
catgacgccctgttgtgcatcgccggcggcaggatcatcgccgagagcgaccgcgagcaa
ctgacgcccgatcatcgcttcaagacacgcgccgaaatggcggtgctgttcgccgacatc
ccggaggccctggcgtctaccgtcgagatcgccgaacgctgcgcctatcggccgcgcacg
cgcaaaccgatcttgccgcgcttcaccgtcggcgcaggcagcaatgccgaagcggcagcg
caggaggaaaccgacgaattgcgccggcaggccgtcgagggtctggagcgtcggctcaag
gtgcatggcctgtcgcagggacgcagtgaggaggactatcggtcgcggctcgatttcgag
ctgagcgtcatcgcccgcatgaattatgccggctacttcctgatcgtgtcggacttcatc
aaatgggcgaagtcgcagggcattccggtcgggccgggccgcggttcgggcgcaggctcg
ctggtcgcctgggtgctgaccatcaccgatctcgatcctctgcaattcaacctgctgttc
gagcgcttcctcaatccggaacgcgtgtcgatgcccgacttcgacatcgacttctgccag
gaccgccgcggcgaggtgatctcctatgtgcaggagcgctacggccgcgatcaggtcgcg
cagatcatcaccttcgggacgctccaggcccgcggtgtgctacgtgacgtcggtcgcgtg
ctgcagatgccctacgggcaggtcgacaagttgaccaagctcgtcccgcaaaatccagcc
gcgccggtgacgctcaagcaagcgatcgaggacgagcccaaactgcaggcggcgcgggac
gaagacccgatcgtcgccaaggctttcgacatcgcgcagaagctggaaggtctgacccgc
cacgcctcgacgcatgcggcgggcatcgtgatcggggaccggccgttgtcagagctcgtg
ccgatgtatcgcgatccgaaatcggatatgccggtcacccagttcaacatgaagtgggtc
gagcccgcgggcctcgtgaagttcgacttcctcggcctgaagacgctgaccgtgctcgat
gtcgcgtgcaaactgctcaagcagcgcgacatccatgtcgatctcgccacgacgccgatc
accgatgcggcgagttacgaaatgctggcgcgcggcgaagtggtcggtgtgttccaggtg
gaaagcgccggcatgcggcgcgcgctggtggatatgcggcccgaccggttcgaggacatc
atcgcgctggtcgcgctgtatcgcccgggcccgatggcgaacatcccgacctattgcgcg
cgcaagcatggcgacgaggagccggaatatctgcacccgatcatcgagccgatcctgaag
gagaccttcggcgtcatcatctatcaggaacaggtgatgcagatcgcgcaggtgatggcg
ggctattcgctcggcgacgccgatctgttgcgccgcgccatgggcaagaagatccgcgcc
gagatggagaagcagcgcgagatttttgtcgcgggctcggtgaagaacggcgtaccgaaa
gggcaggccgatacgatttttgatctgctcgcgaagttcgccgactacggcttcaacaag
agccatgcagcggcctatgcgctggtgtcgtatcacaccgcttatatgaaggcgcattat
ccggtggagttcatcgccgcgtccatgacgctggacatgagcaacacggacaagctctcg
gaattccgtgctgaagcgcagcggctcggcatcaaggtcgaggcgcccaacatcaatcgt
tccggcgtcgtcttcgaggtaggcgagaacacgatctattacgcgctggcggcgctgaag
ggcgttggcgccgctgctgtcgagcagatcgtcgcggagcgcaacaggaacgggctgttc
acctcgctcgccgatttcgcctcacgggtcagtcccaaggccgtcaacaaacggatcatc
gagacgctggccgctgccggcgcgttcgatacgctcgatccgcaccgagcccgcgtgcat
ggcggcgcggacagcattcttgccgcctgccagcgcgccaacgaggctgcgacctcgggg
cagaacgacatgttcggcggcgccaccgatgcgcccacggtgatgctgccgcagatcgac
aactggcttgccgccgagaagctgcgcaaggaatacgatgccatcggcttcttcctgtcc
ggccatccgctcgacgattacgccactgcattgaagcggctacgggtgcaaagctgggct
gatttttgcaaggcggtgaagacgggggcgacggccggcaaggtcgccgcaaccgtcgtg
tcgcgtcaggaacgccgcaccaagaccggcaacaagatgggcatcatgggcctgtcggac
ccgaccggccatttcgaggcgattctgttctccgagggcctcgcccagtaccgggacgtg
ctggaacccggcgccgcagtcctgctgcagctcggtgcggaactccagggagaggatgtt
cgtgcccgcgtcattcatgcggaaccgctcgacgcggccgcagcaaagacgcagaagggt
ctacggattgtgatgaaggacaccaaagcattggattcgttggaaaaacggctccagcgg
cagatcggtccgggcaatggaggcggtgacgtctcgattgtcctacggctcgatctccag
accgaggtcgaattcaagctcgacggccgattcgtggtgtcgccgcagatcgccggggcg
atcaaggccgtgacgggcgtcgagatggtcgagaccctgtag
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