Rhodopseudomonas boonkerdii: E0H22_16630
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Entry
E0H22_16630 CDS
T07799
Name
(GenBank) DNA-directed RNA polymerase subunit alpha
KO
K03040
DNA-directed RNA polymerase subunit alpha [EC:
2.7.7.6
]
Organism
rbk
Rhodopseudomonas boonkerdii
Pathway
rbk03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
rbk00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
E0H22_16630
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rbk03021
]
E0H22_16630
03400 DNA repair and recombination proteins [BR:
rbk03400
]
E0H22_16630
Enzymes [BR:
rbk01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
E0H22_16630
Transcription machinery [BR:
rbk03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
E0H22_16630
DNA repair and recombination proteins [BR:
rbk03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
E0H22_16630
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_A_bac
RNA_pol_A_CTD
RNA_pol_L
DUF211
HHH_XRCC3_RpoA
IDH
DUF4249
Motif
Other DBs
NCBI-ProteinID:
UGV29033
LinkDB
All DBs
Position
complement(3664802..3665833)
Genome browser
AA seq
343 aa
AA seq
DB search
MGDPVTIQKNWQELIRPNKLQVTPGSDPSRFATLVAEPLERGFGQTLGNALRRILLSSLQ
GAAVQSVHIDGVLHEFSSIAGVREDVTDIVLNVKDISIKMLGEGPKRMVVKKQGPGVVTA
GDIQTVGDITVLNPELQLCTLDDGAEIRMEFTVSGGKGYVAAEHNRPEDAPIGLIPVDSL
YSPVRKVSYKVENTREGQILDYDKLTMTIETNGALTPEDAVAYAARILQDQLNVFVNFEE
PRKEVAQEVIPDLAFNPAFLKKVDELELSVRSANCLKNDNIVYIGDLVQKSEAEMLRTPN
FGRKSLNEIKEVLAQMGLHLGMEVPGWPPENIDELAKRFEDHY
NT seq
1032 nt
NT seq
+upstream
nt +downstream
nt
atgggtgacccagtgacgatccagaaaaattggcaagagcttatccgccccaacaagctg
caggtgactccgggcagcgatccctcgcgtttcgcgactctcgtcgccgagccgctcgag
cgtggtttcggtcaaaccctcggcaacgcgctgcgccgcatcctgctgtcgtcgttgcag
ggcgctgccgtgcagtcggtgcacatcgatggcgtgctgcacgagttctcctcgatcgcc
ggcgtgcgtgaagacgtcaccgacatcgtgctgaacgtcaaggacatctcgatcaagatg
ctcggcgaaggcccgaagcgcatggtcgtgaagaagcaggggccgggcgttgtcaccgcc
ggcgatatccagaccgttggcgacatcaccgttctcaaccctgaactgcagctctgcact
ctcgacgatggcgccgagatccgcatggagttcaccgtgtcgggtggcaagggctatgtc
gcagccgaacacaaccgtccggaagatgcgccgatcggcctgatcccggtcgacagcctg
tattcgccggttcgcaaggtcagctacaaggtcgagaacacccgtgagggccagatcctc
gactacgacaagctcaccatgaccatcgagaccaacggcgcgctgacgcccgaggacgct
gtggcttacgccgcgcgcatcctgcaggaccagctcaacgtgttcgtgaacttcgaagag
ccccgcaaggaagtcgctcaggaagttatcccggatctcgccttcaaccccgccttcctc
aagaaggtggacgagctcgagctttcggtgcgttcggcgaactgcctgaagaacgacaac
atcgtttacatcggcgacctcgtgcagaagtcggaagcggaaatgctccgtaccccgaac
ttcggccgcaagtcgctgaacgaaatcaaggaagtgctggcccagatgggcctgcatctc
ggcatggaagtgcccggttggccgccggagaatatcgacgagctggcgaagcgcttcgaa
gaccactactga
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