Rhodopseudomonas boonkerdii: E0H22_16800
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Entry
E0H22_16800 CDS
T07799
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
rbk
Rhodopseudomonas boonkerdii
Pathway
rbk03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
rbk00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
E0H22_16800 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rbk03021
]
E0H22_16800 (rpoC)
03400 DNA repair and recombination proteins [BR:
rbk03400
]
E0H22_16800 (rpoC)
Enzymes [BR:
rbk01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
E0H22_16800 (rpoC)
Transcription machinery [BR:
rbk03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
E0H22_16800 (rpoC)
DNA repair and recombination proteins [BR:
rbk03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
E0H22_16800 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
RnfC_N
PspA_IM30
S-Me-THD_C
Motif
Other DBs
NCBI-ProteinID:
UGV27198
LinkDB
All DBs
Position
complement(3689819..3694018)
Genome browser
AA seq
1399 aa
AA seq
DB search
MNQEIMNLFNPTTPAQVFDQIRISIASPEKILSWSYGEIKKPETINYRTFKPERDGLFCA
RIFGPIKDYECLCGKYKRMKYKGIICEKCSVEVTLSRVRRERMGHIELAAPVAHIWFLKS
LPSRIGQLLDMTLKDLERILYFEYYVVLEPGLTALKDRQLLSEDEYLKAQDEYGQDSFTA
MIGAEAIRELLRGLDLEKLDVELRAEMKETDSDIKHKKLAKRLKIVEAFRFSGNKPEWMI
LTVVPVIPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLMELRAPDIIIRNEKRM
LQEAVDALFDNGRRGRVITGANKRPLKSLADMLKGKQGRFRQNLLGKRVDYSGRSVIVVG
PELRLHQCGLPKKMALELFKPFIYSRLDAKGLSTTVKQAKKLVEKERPEVWDILDEVIRE
HPVLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCSAFNADFDGDQMAVHVPLSLEAQL
EARVLMMSTNNILHPANGQPIIVPSQDIVLGLYYLSTMRAGLPGEGKVYREMSEIEHALH
AKVIHLHTKIKYSWTGLDADGKTVTRLIETTPGRAMLGQVLPKHPKVPFETINKLMTKKE
ISGVIDQVYRHCGQKETVIFCDRIMALGFYNAFKAGISFGKDDMVVPGSKWKIVDSTRAY
AKDFEQQYNDGLITHGEKYNKVVDAWSKASEEVAKEMMKEISSVKKNDKGEEAQINSIYM
MAHSGARGSPAQMRQLGGMRGLMAKPSGEIIETPIISNFKEGLSVLEYFNSTHGARKGLA
DTALKTANSGYLTRRLVDVAQDCIITQTDCGTNLGIKMRAIVDAGSVVASLASRILGRSA
CEDIVDPNSGEVLIKRNTLMEEKDVDRLQKAGIQEVKIRSALTCELVNGICGTCYGRDLA
RGTPVNHGEAVGVIAAQSIGEPGTQLTMRTFHIGGAAQLNEQSVIESNFDGKVTIRNEGL
AKNGEGHTVAMVRNMVIAISDADGTERATYRIQYGARVHVANGDTVKRGQRITEWDPYSR
PLLTEVDGTIGFEDLVDGQSVTETLDESTGIAKRVVIDWRTSRAGADLRPAVVVKGADGK
VLKLARGGDARYMLSPDAILSVDVGAKVQAGDILARVSTESAKTRDITGGLPRVAELFEA
RKPKDAAIIAEIGGTIRFGRDYKNKRRISIEPLDKTEETREYLIPKGKHIHLQDGDIVEK
GDFIVEGNPAPHDILAIKGIEELAAYLVNEIQEVYRLQGVLINDKHIEVIVRQMLQKIEV
TDQGDTDMIAGEQVDKIEFNALNAKAEEEGKKPATGNPVLLGITKASLQTRSFFSAASFQ
ETTRVLTEAAVNGKIDPLEGLKENVIVGRLIPAGTGASMAKIREVAMKRDAMIQDEREKQ
AAVVPSAPEAEPLALPPAE
NT seq
4200 nt
NT seq
+upstream
nt +downstream
nt
atgaaccaagaaattatgaatctcttcaatccgacgacgccggctcaggtcttcgaccag
atccggatctcgattgcgtctccggagaagattctgtcctggtcctacggcgagatcaag
aagccggaaaccatcaactatcgtaccttcaagcccgagcgcgacggcctgttctgcgcc
cgcatcttcgggcccatcaaggattacgagtgcttgtgcggcaagtacaagcgcatgaag
tacaagggcatcatctgcgagaagtgctcggtcgaagtgaccctgtcgcgcgtccgtcgc
gagcgcatgggccacatcgagctggctgcgccggtcgctcacatctggttcctgaagtcg
ctgccctcgcgcatcggccagctgctggacatgacgctcaaggatctcgagcgcatcctg
tacttcgaatactacgtcgttcttgagccgggtctcaccgcgctcaaggaccgtcagctg
ctgtctgaagacgagtatctgaaggctcaggacgaatacggccaggattcgttcaccgcc
atgatcggtgcggaagcgatccgcgagctgctgcgcggcctcgacctcgaaaagctcgat
gtcgagctgcgcgccgagatgaaggagaccgactccgacatcaagcacaagaagctcgcc
aagcgcctgaagatcgtcgaagcgttccgcttctccggcaacaagccggaatggatgatt
ctcaccgtcgtgccggtgatcccgccggatctgcgtccgctggtgccgctcgatggcggc
cgcttcgcgacgtcggacctcaacgacctgtatcgccgcgtcatcaaccgtaacaaccgc
ttgaagcgtctgatggagctccgcgcgccggacatcatcatccgcaacgaaaagcgtatg
ttgcaggaagccgttgacgcgctgttcgacaacggccgccgcggccgcgtcatcaccggc
gccaacaagcgtccgctgaagtcgctcgccgacatgctgaagggcaagcagggccgcttc
cgtcagaacctgctcggcaagcgcgtcgactactccggccgttcggtcatcgtggtcggt
cccgaactgcgcctgcatcagtgcggcctgccgaagaagatggcgctcgaactgttcaag
ccgttcatctattcgcgcctcgacgccaagggcctgtccaccacggtgaagcaggctaag
aagctcgtggagaaggagcgtcccgaggtctgggatatcctcgacgaggtcattcgcgag
catcccgtgctgctgaaccgcgcgccgacgctgcatcgtctcggcattcaggcgttcgag
ccggtgctgatcgaaggcaaggcgatccagctgcatccgctggtctgctcggccttcaat
gccgacttcgacggtgaccagatggccgtgcacgttccgctgtcgctcgaagcgcagctg
gaagcgcgcgtgctcatgatgtcgaccaacaacatcctgcacccggcgaacggccagccg
atcatcgtgccgtcgcaggacatcgtgcttggtctgtactacctgtccaccatgcgcgcc
ggcctgccgggcgagggcaaggtgtatcgcgagatgtcggagatcgagcatgcgctgcat
gcgaaggtcatccacctccataccaagatcaagtacagctggaccggtctcgacgccgac
ggcaagaccgtcacgcgtctgatcgaaacgaccccgggccgcgccatgctcggccaggtg
ctgccgaagcatccgaaggtgccgttcgagaccatcaacaagctgatgacgaagaaggaa
atctcaggcgtcatcgatcaggtctaccgccactgcggccagaaggagacggtgatcttc
tgcgatcgcatcatggcgctcggcttctacaatgcgttcaaggcgggcatctcgttcggc
aaggacgacatggtggtgccgggttcgaagtggaagatcgtcgactcgacccgcgcctac
gcgaaggacttcgagcagcagtacaatgacggcctgatcacccacggcgagaagtacaac
aaggtcgtcgacgcctggtcgaaggcatccgaagaagtcgccaaggagatgatgaaggaa
atctcctcggtgaagaagaacgacaagggcgaagaggcgcagatcaactcgatctacatg
atggcgcactcgggtgctcgtggttcgccggctcagatgcgtcagctcggtggcatgcgc
ggcctgatggccaagccgtcgggtgagatcatcgaaacgccgatcatctcgaacttcaag
gaaggcctgtcggttctcgaatacttcaactcgacccacggcgcccgtaagggcctcgcg
gacaccgcgttgaagaccgcgaactccggttacctgacccgtcgtctcgtcgacgtagcg
caggactgcatcatcacgcagaccgactgcggcaccaatctcggcatcaagatgcgtgcc
atcgtcgatgcgggctcggtggtcgcgtcgttggcgtcgcgtatcctcggccgctcggct
tgcgaagacatcgtcgatcccaacagcggtgaagtgctgatcaagcgcaacacgctgatg
gaggagaaggacgtcgatcgtctgcagaaggccggcatccaggaagtgaagatccgctcg
gcgctgacctgcgaactggtcaacggcatctgcggcacctgctatggccgcgaccttgca
cgcggtacgccggtcaaccacggtgaagctgtcggcgtcatcgccgcgcagtcgatcggt
gagcccggcacgcagctgacgatgcgcacgttccacatcggcggcgcggcgcagctcaac
gagcagtcggtgatcgagtcgaacttcgacggtaaggtcaccatccgcaacgaaggtctc
gccaagaacggcgaaggccacaccgtggcgatggtgcgcaacatggtgatcgcgatcagc
gatgccgacggcaccgaacgtgcgacctaccgtattcagtacggcgcgcgcgtgcacgtg
gccaacggcgataccgttaagcgtggccagcgcatcaccgagtgggatccgtattcccgc
ccgttgttgacggaagtcgacggcactatcggcttcgaggatctcgtggacggccagtcc
gtcaccgaaaccctcgacgaatcgaccggtatcgcgaagcgcgtcgtcatcgactggcgc
acgtcgcgtgcaggtgcagacctgcgcccggccgtcgtcgtgaagggcgctgacggcaag
gtgctgaagctggcgcgcggtggcgacgcccgctacatgctctcgcctgatgcgatcctc
tcggtggacgtcggcgccaaggttcaggccggcgacattctcgcccgtgtctcgaccgaa
agcgcgaagacgcgtgacatcaccggcggtctgccgcgcgttgccgaactgttcgaggcc
cgcaagccgaaggacgcggcgatcatcgcggagatcggcggcaccatccgcttcggacgc
gactacaagaacaagcgtcgcatctcgatcgagccgctcgacaagaccgaggagactcgc
gagtacctcattccgaagggcaagcacatccatctgcaggacggcgatatcgttgaaaag
ggcgatttcatcgtcgaaggcaatccggcgccgcacgacattctggcgatcaagggcatc
gaggaactcgctgcctatctggtcaacgagatccaggaagtctaccggttgcagggcgtg
ctcatcaacgacaagcacatcgaagtgattgtccgtcagatgctgcagaagatcgaggtc
accgatcagggcgacaccgacatgatcgcgggcgaacaggtcgacaagatcgagttcaac
gcgctcaacgccaaggcggaagaagagggcaagaagcctgcgacgggcaatccggtgctg
ctcggcatcaccaaggcctcgctgcagactcgctcgttcttctcggcggcgtcgttccag
gagaccacccgcgtcctcacggaggcggcggtcaacggcaagatcgatcccctcgaaggt
ctcaaggagaacgtcattgtcggccgcctgatcccggccggtacgggcgcctccatggcc
aagatccgcgaggtcgccatgaagcgcgacgcgatgatccaggacgagcgcgagaagcag
gcggccgttgtgccgtcggctccggaggcagagccgctggcgctgccgccggccgaataa
DBGET
integrated database retrieval system
