Pseudogemmobacter blasticus: B6K69_00530
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Entry
B6K69_00530 CDS
T05669
Name
(GenBank) MBL fold hydrolase
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
rbl
Pseudogemmobacter blasticus
Pathway
rbl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rbl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
B6K69_00530
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rbl03019
]
B6K69_00530
Messenger RNA biogenesis [BR:
rbl03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
B6K69_00530
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
Lactamase_B
Lactamase_B_2
RMMBL
Anti-Pycsar_Apyc1
Lactamase_B_6
PDEase_II
Motif
Other DBs
NCBI-ProteinID:
AWD20323
LinkDB
All DBs
Position
107136..108815
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AA seq
559 aa
AA seq
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MSKDRLIYLPLGGAGEIGMNAYVFGYGPPGKERLILVDMGVTFPDMDGAPGVDLILPDIS
WLAARVDRLEAIFITHAHEDHIGALALMWPQLGKKKVYARRFTATIGRLKLEEAGLPVDA
VVTVEPRPATVTAGPFKVQFVPVSHSIPESSGLIIDTPAGRIVHSGDFKIDRTPVVGEGW
DDAMWAGIAAEAPVKVLTCDSTNVFSNHPGRSEATLAEPLAKLISEAPGMFVATTFGSNV
ARLKTLAQAGRAADRSICVLGRSMKRMLAASEEAGVLNGFPRIVTPEEALEIPRRNLMLL
VTGSQGERRAASAALSRGKYLGFEMRQGDSFLFSSRTIPGNERSVIHIWNAFSEMGVTVH
DDTDGLYHVSGHANRPDLEHVHRTLLPDMLIPVHGEHRHLTEHVRIATEAGIAGMVATNG
MMLNLTGDVPVVAERIETGRVYLDGSVQIGAMDGVVRDRIRMALNGHVLVTVILDEKDQP
MGEPWVEIMGLTDRGRGDRLLNETLESDLADWMGRAGRKTLKDDGKMDEEIRKVVRQVTM
EEIGKKPEVTVVVSRLIEE
NT seq
1680 nt
NT seq
+upstream
nt +downstream
nt
atgagcaaggaccggctgatctatcttcccctcgggggtgccggcgagatcggcatgaac
gcctatgtgttcggctatggtccgcccggcaaggagcggctgatcctggtcgacatgggc
gtgaccttccccgatatggacggcgcaccgggggttgacctgatcctgcccgacatttcc
tggctggcggcacgggttgaccggctggaggcgatcttcatcacccatgcccacgaagac
catatcggggcgctggcactgatgtggccgcagcttggcaagaagaaggtctatgcccgc
cgcttcaccgccaccatcggccggctgaagctggaagaggccgggttgccggttgatgcg
gtggtcaccgtcgagccgcggcccgcaaccgtgaccgccgggccgttcaaggtgcagttc
gtgccggtcagccattccatccccgaaagctcgggtctgatcattgatacgcccgcgggg
cggatcgtccattccggcgatttcaagatcgaccgcacccccgtggtgggcgagggctgg
gatgatgcgatgtgggccggcatcgccgccgaagcgccggtcaaggtgctgacctgcgac
agcaccaacgtgttttcgaaccatcccggccggtccgaggcgacgctggccgaaccgctg
gccaagctgatttcggaagcgccggggatgttcgtcgccaccaccttcgggtcgaacgtg
gcacggctgaagacgctggcgcaggctggccgcgctgccgatcggtcaatctgcgtattg
ggccgttccatgaagcggatgctggcggcttcagaagaggcgggggtgctgaacggcttt
ccccgcatcgtgacgccggaagaggcgctggaaattccgcgccgcaacctgatgctgttg
gtcaccggcagccagggcgaacgccgtgcggcaagtgcggcgctgtcgcgcggcaagtat
ctgggattcgagatgcggcagggcgacagcttcctgttctcaagccgcaccattccgggc
aacgagcgcagcgtgatccacatctggaatgcgttttcagagatgggcgtcacggtgcat
gacgatactgacgggctttaccacgtctcgggccatgccaaccggcccgatctggaacat
gttcaccgcacgctgctgcccgacatgctgatcccggtgcatggcgaacatcgccacctg
acggaacatgtccgcatcgccaccgaggccggcattgccggcatggtggccaccaatggc
atgatgctgaacctgaccggcgatgtgccggtggtggccgagcggatcgagaccgggcgc
gtctatctggacggctcggtgcagatcggcgccatggatggcgtggtgcgcgaccgtatc
cgcatggcgctgaacgggcatgtgctggtgacggtgatcctggacgagaaggatcagccg
atgggcgaaccctgggtcgagatcatgggtctgaccgaccgcggccgtggcgaccggctg
ctgaacgaaacccttgaatccgatctggccgactggatggggcgtgccgggcgcaagacg
ctcaaggatgacggcaagatggatgaggaaatccgcaaggtcgttcgccaggtcaccatg
gaggagatcggcaagaagccagaggtgacggtcgtcgtcagccgactgatcgaggaatga
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