Pseudogemmobacter blasticus: B6K69_03915
Help
Entry
B6K69_03915 CDS
T05669
Name
(GenBank) ribonuclease E/G
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
rbl
Pseudogemmobacter blasticus
Pathway
rbl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rbl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
B6K69_03915
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rbl03019
]
B6K69_03915
03009 Ribosome biogenesis [BR:
rbl03009
]
B6K69_03915
Enzymes [BR:
rbl01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
B6K69_03915
Messenger RNA biogenesis [BR:
rbl03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
B6K69_03915
Ribosome biogenesis [BR:
rbl03009
]
Prokaryotic type
rRNA processing factors
B6K69_03915
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
DnaJ_CXXCXGXG
Motif
Other DBs
NCBI-ProteinID:
AWD20918
LinkDB
All DBs
Position
complement(822746..825466)
Genome browser
AA seq
906 aa
AA seq
DB search
MPKKMLIDATHAEETRVVVVDGNKVEEFDFETVNKRQLAGNIYLAKVTRVEPSLQAAFVD
YGGNRHGFLAFAEIHPDYYQIPVADRKALLEEERQLARAEEEEENRRHRRRAPRPKAESA
RPDAVKSGPSGMDVVDLEDEAAEVPADAIAEATDVVAESAVEQAVAAPATENGENGAPAW
RAMDHASDTDDEIESIAEEDVSEEISAPKRSRSRRYKIQEVIKVRQIMLVQVVKEERGNK
GAALTTYLSLAGRYCVLMPNTARGGGISRKITNAVDRKKLKEIAGEMEVPEGAGLIIRTA
GAKRTKAEIKRDYEYLMRLWEEVRDLTLKSIAPATIYEEGNLIKRTIRDLYSREIDEVLV
EGEGGYRTAKDFMRMIMPSHAKQVKRYDEPMPLFARYQVESYLAGMFNPVVQLKSGGYIV
IGVTEALVAIDVNSGRATKEGSIEETALKTNVEAAEEIARQLRLRDLAGLIVIDFIDMEE
RKNNATVEKRLKDKLKTDRARIQVGRISGFGLMEMSRQRLRPGMLESTTQPCPHCHGTGL
IRSDDSMALTILRALEEEGTRKRSKEVLLKAPVGIINYLFNQKREHIALIEARYGMAVRL
EADPMLVSPDYSIEKFKTATRVVPEPMPVVSGHAGLMGAPVEEEDEDDLVDEAEIEEDEP
EVEAEGEETEARAPAPRGGDRGGDGEGGKKKRRRRRRRRSGNREGGAEGAAEGQDDADDA
DEAEEGAAPEAAAETVNVEDAAAEPAPARKRTRARRKPAAEAATEAAAEPVAEAAPEAEA
PARKRTRAPRKSAASAEANAEASAAEAAPAETASEAPADAEAKPAAKAKPAARSRAAKPA
KPAAPAEPAPVAAEAAPEAAPAPAEVEAPALQPAPTPDPAEGTALQSDPGEAAASKPRRF
GWWSKK
NT seq
2721 nt
NT seq
+upstream
nt +downstream
nt
atgcccaagaagatgcttatcgacgccacacatgcggaagagacccgcgttgtcgtggtg
gacggaaacaaggtcgaagagtttgactttgaaaccgtaaacaagcgccaactggccggg
aacatctacctggccaaggtgacacgggtcgaaccctcgctgcaggcggcctttgtggat
tacggcgggaaccgccacgggttcctggccttcgccgaaatccacccggattactaccag
atcccggtcgccgaccggaaggcgctgctggaagaggaacgccagcttgcccgcgccgag
gaagaggaagaaaaccgccgccatcgccgccgcgcgccccgtcccaaggccgaatccgcc
cgccccgacgcggtgaaatccggcccctcgggcatggatgtggtggatcttgaagacgag
gcggccgaagtgcccgccgatgcgattgccgaagcgaccgacgtggttgcagagtccgcc
gttgaacaggccgttgcggcccccgccaccgaaaacggcgaaaacggcgccccggcctgg
cgcgcgatggatcacgcctcggacaccgatgacgagatcgaatcgattgccgaagaagac
gtgtccgaagagatcagcgccccgaaacggtcgcgctcgcggcgctacaagattcaggaa
gtgatcaaggtccggcagatcatgctggtccaggtcgtcaaggaagaacgcggcaacaag
ggcgcggcgctgaccacctatctgtcgctggccggccgctactgcgtgctgatgccgaac
accgcgcgcggcggcggcatttcccgcaagatcaccaacgccgttgaccgcaagaagctc
aaggaaatcgcgggcgagatggaggtgccggaaggtgccggcctgatcatccgcaccgcg
ggcgccaagcgcaccaaggccgagatcaagcgcgactacgaatatctgatgcgcctgtgg
gaagaggtgcgtgatctgacgctcaagtcgatcgcccccgccacgatctacgaggaaggc
aacctcatcaagcgcacgatccgcgacctttactcgcgcgagatcgacgaggttctggtg
gaaggcgagggcggttaccgcaccgccaaggacttcatgcggatgatcatgcccagccac
gccaagcaggtgaagcggtatgacgaacccatgccgttgttcgcccgctatcaggtggaa
agctacctggccggcatgttcaacccggtcgtgcaactgaaatcgggcggctacatcgtc
atcggcgtgaccgaggcgctggttgccatcgacgtgaactcgggccgcgccaccaaggaa
ggctcgatcgaggaaaccgcgctcaagaccaacgtcgaggccgccgaagagattgcccgc
cagttgcgcctgcgcgacctggccggtctgatcgtcatcgacttcatcgacatggaagag
cggaagaacaacgccaccgtcgagaagcgcctcaaggacaagctcaagaccgaccgcgcc
cgcatccaggtgggccgcatctcgggcttcggcctgatggaaatgagccgccagcgcctg
cgccccgggatgctggaatcgaccacgcagccttgcccgcattgccacggcaccggcctg
atccgcagcgacgacagcatggcgctgaccatcctgcgcgcgctggaagaggaaggcacc
cgcaagcgcagcaaggaagtgctgctgaaggcgccggtcggcatcatcaactacctgttc
aaccagaagcgcgaacacatcgcgctgatcgaggcccgctatggcatggcggtccggctt
gaggccgacccgatgctggtgtcgcccgactactcgatcgagaagttcaagaccgcgacc
cgcgtggtgccggaaccgatgccggtggtgtcgggtcatgccggcctgatgggcgccccc
gtcgaggaagaggacgaagacgatctggtcgatgaggccgagatcgaagaggacgagccc
gaggtcgaggccgagggcgaggaaaccgaagcccgcgctccggcgccgcgcggcggtgac
cgtggcggtgacggagagggtggcaagaagaagcgccgccgccgccgtcgtcgtcggagt
ggaaaccgcgaaggcggggccgaaggggccgccgaggggcaggacgatgccgatgacgcc
gacgaggccgaagagggcgccgcccccgaagccgctgccgagacggtgaacgtcgaggac
gccgctgccgaacccgccccggcccgcaagcgcacccgcgcccggcgcaagcccgccgcg
gaagccgcaaccgaagctgccgccgagccggtggccgaggccgcgcccgaagccgaagcc
ccggcgcgcaagcgcacccgtgccccgcgcaagtctgcggccagtgctgaggccaatgcc
gaggcaagcgccgccgaagccgcgcccgccgagaccgccagcgaagcgccggctgacgcc
gaagccaagccggccgccaaggcgaaaccggcggcccgctccagggcggccaaaccggcc
aagcccgccgccccggcggaaccggcgcctgtcgcggccgaagccgcccccgaagcggcc
cctgcgccggccgaggtggaagcccccgcgctgcaacccgccccgacgcccgacccggcc
gaaggcacggcgctgcaatccgacccgggcgaggccgccgcgtccaagccgcgccggttc
ggctggtggtcgaagaagtga
DBGET
integrated database retrieval system
