Rhizobiales bacterium NRL2: TEF_13040
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Entry
TEF_13040 CDS
T04419
Name
(GenBank) DNA polymerase I
KO
K02335
DNA polymerase I [EC:
2.7.7.7
]
Organism
rbm
Rhizobiales bacterium NRL2
Pathway
rbm03030
DNA replication
rbm03410
Base excision repair
rbm03420
Nucleotide excision repair
rbm03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
rbm00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
TEF_13040
03410 Base excision repair
TEF_13040
03420 Nucleotide excision repair
TEF_13040
03440 Homologous recombination
TEF_13040
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
rbm03032
]
TEF_13040
03400 DNA repair and recombination proteins [BR:
rbm03400
]
TEF_13040
Enzymes [BR:
rbm01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
TEF_13040
DNA replication proteins [BR:
rbm03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
TEF_13040
DNA repair and recombination proteins [BR:
rbm03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA polymerase I
TEF_13040
NER (nucleotide excision repair)
GGR (global genome repair) factors
TEF_13040
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A
5_3_exonuc_N
5_3_exonuc
DNA_pol_A_exo1
NYN_YacP
HHH_2
HHH_5
Motif
Other DBs
NCBI-ProteinID:
ANK81616
LinkDB
All DBs
Position
2799375..2802152
Genome browser
AA seq
925 aa
AA seq
DB search
MAENGKHLVYLIDGSGYIFRAYHALPPLTRPDGTNVGAVSGFCNMLYKLLDETLQSGKAT
HFAVIFDHSSKSFRNEIYGDYKANRPPPPEDLVPQFPLFRDAVRAFGLPCIEMEGYEADD
LIATYAEQAKADGHDVVIVSSDKDLMQLVDGGVTMLDPMKNRPIGRAEVREKFFVEPERV
IDVQALAGDSTDNVPGVPGIGIKTAAQLIEEYGDLENLLAHAEEIKQPKRRQNLIEHADL
ARVSMELVRLKRDVEVEHDIDGFIIGPPDPAPLIGFLEEQSFRTLTSRVRARFGGEEGQA
LNEVAETPPPEDAEYELIQDMAALERWIAEIRECGFVAVDTETNSLDAVAADLVGISLST
APGHACYIPLRHRGAAPDGELDLGGGNTDAPKQIPLADAIAALRPVFADPGILKIGQNIK
YDCTVLQRAGAPVHPIDDTMLLSFVLDAGAHGHGMDELSRLHLDYAPIPYKEVAGTGKAQ
ITFDHVPLDKALDYAAEDADITLRLWRVLKPRLAQEHMATVYETIERPLVPVIAAMEQAG
IRVDADILRELSNDFELRAAEIESDIHALAGENFNIGSPKQLGEILFDKMSLGGGRKGKT
GAYATGADILEDLAAQGHELPRRVLDWRQLTKLKSTYTDALQKEINPATGRVHTAYHMAG
ASTGRLASSDPNLQNIPIRTEEGRKIRRAFVAEKGCKLISADYSQIELRILAHIADIEAL
KGAFAEGADIHALTASEVFGVPLAEMDGATRRKAKAINFGIIYGISPFGLARQLQIPQGE
AKSFIDAYFERYPGVKDYMDQAREQAKEHGFVETLYGRRIHLATIRDKNPARRSFAERAA
INAPIQGSAADIIKRAMIRIPAALDGAGLAAKMLLQVHDELIFEAPEDQVEATIEAVKTT
MERAAHLSVPLTVEAGVGDSWADAH
NT seq
2778 nt
NT seq
+upstream
nt +downstream
nt
atggcggagaacggcaagcatctggtctatctgatcgacggctcgggctacatcttccgc
gcctatcacgccctgccgccgctgactcgccccgacggcaccaatgtcggcgcggtctcg
ggcttctgcaacatgctctacaagctgctggacgagacgctgcagtccggcaaggcgacc
cacttcgccgtcatcttcgaccattcctccaagagtttccgcaatgagatctacggcgac
tacaaggccaaccggccgccgccgcccgaggacctggtgccgcagtttccgctgttccgc
gacgccgtgcgcgccttcggcctgccctgcatcgagatggaaggctacgaagccgacgac
ctgatcgcgacctatgccgaacaggcgaaggccgacggccatgacgtggtcatcgtttcc
tccgacaaggacctgatgcagctcgtcgacggcggcgtcaccatgctcgacccgatgaag
aaccgccccatcggccgcgccgaggtgcgcgagaagttcttcgtggagccggaacgggtg
atcgacgtccaggcgctggccggggattcaaccgacaacgtaccgggcgtgccgggaatc
ggcatcaagaccgctgcacaactcattgaagaatatggcgatctcgagaatcttctcgct
catgccgaagagatcaagcagcccaagcggcgtcagaacctgatcgagcatgccgacctt
gcgcgggtcagcatggaactggtccgcctgaagcgcgatgtcgaggtcgaacacgacatt
gacggattcatcatcgggccgcccgatccggcgccgctgatcggcttcctcgaggaacag
agcttccgcaccctgaccagccgggtccgcgcgcgcttcggcggcgaggagggccaggcc
ctgaacgaagtcgccgaaacgccgccgccggaagacgccgaatacgaactgatccaggac
atggcggcgctggagaggtggatcgcggagatccgcgaatgcggtttcgtcgcggtggac
acggaaacgaactcgctcgacgcggtcgccgccgacctcgtcggcatctcgctttccacc
gcgccgggccatgcctgctacatcccgctgcgccaccgcggcgcggcgccggacggcgaa
ctcgatctgggcggcgggaacacggatgcgccgaagcagattccgctcgcggacgccatc
gcggcgctgcggcccgtattcgccgatccgggcatcctcaagatcgggcagaacatcaag
tacgactgcacggtgctgcagcgcgccggcgcgcccgtgcacccgatcgacgacaccatg
ctgctcagtttcgtgctcgacgccggcgcccatggccacggcatggacgagctttcgcgg
ctgcatctggactacgcgccgatcccctacaaggaggtcgcgggcacgggcaaggcgcag
atcaccttcgatcacgtgccgctggacaaggcgctcgactacgccgccgaagacgccgac
atcaccctccggctctggcgggtgctgaagccgcgcctggcgcaggagcacatggcgacc
gtctacgagaccatcgaacgcccgctcgtgccggtgatcgcggcgatggagcaggccggc
atcagggtcgacgcggatatcctgcgcgagctgtccaacgacttcgaactgcgcgccgcc
gagatcgaaagcgatatccatgcgctggccggcgagaacttcaacatcggcagccccaag
cagctcggcgagatcctgttcgacaagatgagcctcggcggcggcaggaagggcaagacc
ggcgcctatgccaccggcgcggatatcctggaagacctcgcggcccagggccacgaactg
ccgcggcgggtgctcgactggcgccagctcaccaagctgaagtcgacctataccgacgcc
ctgcagaaggaaatcaatccggccaccggccgggttcataccgcctatcacatggccggg
gcgtcgaccggccgcctcgcctcatccgatccgaacctgcagaacatcccgatccgcacc
gaggagggccgcaagatccgccgcgccttcgtcgccgaaaagggctgcaagctgatctcg
gccgactacagccagatcgaactcaggatcctcgcccacatcgccgatatcgaggcgctg
aagggcgccttcgccgagggcgcggacattcacgcactcaccgcctcggaggtcttcggc
gtgccgctggcggagatggacggcgccacgcggcgcaaggccaaggcgatcaacttcggc
atcatctacggcatctcccccttcggactggcgcggcagctgcagatcccgcagggcgaa
gcgaagagtttcatcgacgcctatttcgagcgctatcccggtgtgaaggactacatggac
caggcgcgggaacaggcgaaggaacatggcttcgtggagacgctctatggccgccgcatc
caccttgccacgatacgcgacaagaatccggcgcggcggagcttcgccgagcgcgccgcc
atcaacgcgccgatccagggttcggccgccgacatcatcaagcgcgccatgatccgcatt
cccgccgccctcgacggcgccgggctggcggcgaagatgctgctgcaggtccacgacgaa
ctgatcttcgaagcgcccgaagatcaggtcgaagccaccatcgaggccgtgaagaccacc
atggagcgcgcggcgcatctctccgtcccgctcacggtggaggcgggcgtcggggattca
tgggccgacgcgcactag
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