Rhizobiales bacterium NRL2: TEF_16325
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Entry
TEF_16325 CDS
T04419
Name
(GenBank) integration host factor subunit beta
KO
K05788
integration host factor subunit beta
Organism
rbm
Rhizobiales bacterium NRL2
Brite
KEGG Orthology (KO) [BR:
rbm00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
rbm03032
]
TEF_16325
03036 Chromosome and associated proteins [BR:
rbm03036
]
TEF_16325
03400 DNA repair and recombination proteins [BR:
rbm03400
]
TEF_16325
DNA replication proteins [BR:
rbm03032
]
Prokaryotic type
DNA Replication Initiation Factors
Initiation factors (bacterial)
TEF_16325
Chromosome and associated proteins [BR:
rbm03036
]
Prokaryotic type
Nucleoid associated proteins
IHF (integration host factor)
TEF_16325
DNA repair and recombination proteins [BR:
rbm03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Facilitator
TEF_16325
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Bac_DNA_binding
HU-HIG
HU-CCDC81_euk_1
HU-CCDC81_bac_2
Motif
Other DBs
NCBI-ProteinID:
ANK82179
LinkDB
All DBs
Position
complement(3512500..3512811)
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AA seq
103 aa
AA seq
DB search
MIKSELINRIAERHRRRHVDEDPERQLSHRDFERVVSTVFDEITAALSRGDRVELRGFGA
FSVKRRPARVGRNPRTGESVEVQEKYVPFFKTGKELRERLNTD
NT seq
312 nt
NT seq
+upstream
nt +downstream
nt
atgatcaagtcggaactgatcaatcgcattgctgaacgtcaccggcgtcgccatgtcgac
gaggatccggaaaggcagctcagccatcgggatttcgaacgcgtcgtatcgaccgtcttc
gacgagattaccgcggcgctgtcgcgcggggatcgggtggagctgcgtggctttggcgcc
ttctctgtcaagcggcggccggcgcgcgtcgggcgcaatccgcgcaccggcgaatcggtc
gaggtgcaggagaagtacgtgcccttcttcaagaccggcaaggaactcagggaacgcctg
aacaccgactga
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