Rhizobiales bacterium NRL2: TEF_19950
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Entry
TEF_19950 CDS
T04419
Name
(GenBank) 2'-5' RNA ligase
KO
K01975
RNA 2',3'-cyclic 3'-phosphodiesterase [EC:
3.1.4.58
]
Organism
rbm
Rhizobiales bacterium NRL2
Brite
KEGG Orthology (KO) [BR:
rbm00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
rbm03016
]
TEF_19950
Enzymes [BR:
rbm01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.4 Phosphoric-diester hydrolases
3.1.4.58 RNA 2',3'-cyclic 3'-phosphodiesterase
TEF_19950
Transfer RNA biogenesis [BR:
rbm03016
]
Prokaryotic type
tRNA spricing factors
Other tRNA splicing factors
TEF_19950
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
LigT_PEase
2_5_RNA_ligase2
AKAP7_NLS
HVSL
Motif
Other DBs
NCBI-ProteinID:
ANK82816
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All DBs
Position
4263622..4264188
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AA seq
188 aa
AA seq
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MRLFIGIRLPEPVAERLAMTAGGVPGARWIPRENLHLTLRFLGDTETPMAEDLVDELSAL
RAPAFDLRLAGVGLFGDRRRTRMLWAGVEPQPALTHLQKKVEQAAQRAGFEPERRKFHPH
VTLARLRDAPRSRIQQFLHENGDLSTPPFEVVDFTLYRSFLSSDGARYEPQCDFELDPPA
DPLRAAAV
NT seq
567 nt
NT seq
+upstream
nt +downstream
nt
atgcgcctgttcataggcatccgactgcccgagcccgtcgccgagcgcctggcgatgacg
gcgggcggcgtccccggcgcgcggtggatcccgcgcgagaacctgcacctgaccctgcgc
ttcctgggcgacacggaaacgcccatggccgaggatctggtggacgaactgtcggcgctg
cgcgcgccggccttcgacctgcgcctcgcgggcgtcgggctgttcggcgaccgcaggcgc
acgcggatgctctgggccggcgtcgagccgcagccggcgctgacccacctgcagaagaag
gtcgagcaggccgcgcagcgggccggcttcgaaccggaacggcgcaagttccatccgcac
gtgaccctcgcccggctgagagacgcgccgcgctccaggatccagcagttcctgcacgag
aacggcgatctctccacgccgcccttcgaagtggtcgatttcacgctctaccgcagcttc
ctgtcctcggacggcgcgcgctacgagccgcaatgcgacttcgaactcgacccgcccgcg
gacccgctcagggcggcggctgtttag
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