Rhizobiales bacterium NRL2: TEF_20670
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Entry
TEF_20670 CDS
T04419
Name
(GenBank) hypothetical protein
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
rbm
Rhizobiales bacterium NRL2
Pathway
rbm03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rbm00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
TEF_20670
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rbm03019
]
TEF_20670
03009 Ribosome biogenesis [BR:
rbm03009
]
TEF_20670
Enzymes [BR:
rbm01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
TEF_20670
Messenger RNA biogenesis [BR:
rbm03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
TEF_20670
Ribosome biogenesis [BR:
rbm03009
]
Prokaryotic type
rRNA processing factors
TEF_20670
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
ANK82949
LinkDB
All DBs
Position
complement(4417628..4420270)
Genome browser
AA seq
880 aa
AA seq
DB search
MATRMLIDAAHPEETRVVIVKGNRLEEFDFEVGSRKPLKGNIYLAKVTRVEPSLQAAFVE
FGGNRHGFLAFNEIHPDYYQIPIADREALLAEQRKEVARVAEQEEAEIAETDDDEDDGGD
QPKRRGRGRGRGRRRGGRAPASENGNGDDDAEGPVESVGGDEVDEEVSPRRISSSRPYKI
QEVIKRRQIILVQVVKEERGNKGAALTTYLSLAGRYCVLMPNTARGGGISRKITNAQDRR
KLKSVVGELEVPEGTGVIVRTAGAARTKSEIRRDFEFLLKLWDDIRDLTLQSTAPALVYE
EASLITRAIRDFYSKEIEEVLVAGEEGYRVAKDFMKRIMPSHAKRVQPYRDRIPLLHRYQ
VEPQLDTMYSKEVTLPSGGYIVIDSAEALVAVDVNSGKSTRGRSVEETAYKTNLEAAEEV
ARQLRLRDLAGLIVIDFIDMEDQRNNRSVERKLKECLKVDRARIQVGRISHFGLLEMSRQ
RLRPGVQDVNMEACPHCGGSGRVRSIDSASLHILRAIEEEGIRDRSAEIRVNMPTAIAIY
VINNKRHALAEIEQRYGFRVEIAADEELLAPDFRIERLTVKEPGAEALDESWRQPIEPDE
AEEADEAEEADEADEAEERDRDDAQDGEEERGGRRRRSSRRRRRGGGQQPDESGDKDGES
DRAEDPQPKSETDEGGASDDDEDEDGKRRRRGRRGGRRRRGRRSDGEDSPFVMAAAVPND
EDAEEIQPTGGEEPVAGDSETEPAATAEESVTQETPSAAEESVNEDVPAAAEAAEPAPRP
ATGSEPEAVQTDAQADADQEPAAPADETPAGAGETAGAEPVTEAEPEPAQAAEEKTEESV
DAAQPVEVAQPANEDEPEPAEEVADAGPPKRGWWRRRPRN
NT seq
2643 nt
NT seq
+upstream
nt +downstream
nt
atggccacgcgcatgctgatcgatgcggcccatcctgaggaaaccagggtcgtcatcgtc
aagggcaaccgactcgaggaattcgatttcgaagtcggcagccgcaagcccctgaagggc
aatatctatctcgccaaggttacccgcgtcgaaccgtccctgcaggcggcgttcgtggag
ttcggcggcaatcgccatggtttcctggcgttcaacgagatccatcccgactactaccag
attccgatcgccgaccgcgaagccctgctggccgagcagcgcaaggaggtcgcccgcgtc
gccgagcaggaagaggcggagatcgccgaaaccgacgacgacgaggatgacggcggcgat
cagccgaagcgccgcggccgtggccgcggccggggccgccgccgtggcggacgcgcccct
gcatccgagaacggcaatggcgacgatgacgccgagggtccggtcgagagcgtcggcggc
gacgaggtcgacgaggaagtctcgcccaggcgcatttcctcctcccgcccctacaagatc
caggaggtgatcaagcgccgccagatcatcctggtgcaggtcgtcaaggaggaacgcggc
aacaagggcgccgcgcttaccacctatctctcgctggcgggtcgctactgcgtcctgatg
cccaacaccgcccgcggcggcggcatcagccgcaagatcaccaacgcccaggaccggcgc
aagctgaagagcgtcgtcggcgagctggaggtgccggagggtacgggcgtcatcgtgcgc
accgccggcgccgcgcgcacgaaatccgagatccggcgcgacttcgagtttctgctcaag
ctgtgggacgatatccgggatctgacgctgcagtcgacggcgccggcgctggtctacgag
gaagcctcgctgatcacgcgcgccatccgcgacttctattccaaggagatcgaggaagtg
ctggtggcgggcgaagagggctaccgcgtcgccaaggacttcatgaagcgtatcatgccg
tcgcacgccaagcgggtgcagccctatcgcgatcgtatcccgctgctgcaccgctaccag
gtcgagccgcagctcgacaccatgtactccaaggaagtcaccctgccctcgggcggctac
atcgtgatcgattccgccgaggcgctggtggccgtcgacgtcaactccggcaagtccacg
cgcggccgctccgtcgaggagaccgcctacaagacgaacctggaggcggccgaggaagtc
gcccgtcagctccgtctgcgcgatctggccgggctgatcgtcatcgacttcatcgacatg
gaagaccagcgcaacaaccgctcggtcgagcgcaagctcaaggaatgcctgaaggtcgac
cgggcgcgcatccaggtcggccgcatcagtcatttcggcctgctcgagatgtcgcgccag
cggctccgcccgggcgtgcaggacgtcaacatggaggcctgcccccattgcggcggcagc
gggcgcgtgcgctcgatcgattcggcctcgctgcacatcctgcgggccatcgaggaggag
ggcatccgcgaccgctccgccgagatccgggtgaacatgccgacggcgatcgcgatctac
gtgatcaacaacaagcgccacgcgctggcggagatcgagcagcgctatggcttccgcgtc
gagatcgccgccgacgaggaactgctggcgcccgacttccgcatcgagcggctgaccgtc
aaggagcccggcgcggaagcgctggacgaaagctggcgtcagccgatcgagcccgacgag
gccgaagaagcggacgaggccgaagaggctgacgaggccgatgaggcggaggagcgcgac
agggacgacgcgcaggatggcgaagaggagcgcggcggacgccgccgccggtcctcccgc
cggcgccgccgcggcggcgggcagcagcccgacgagagcggagacaaggacggcgagagc
gaccgcgccgaggatccgcagccgaagtccgaaacggatgaaggcggcgcttccgacgat
gacgaggatgaggatggcaagcgccgtcgccggggccgccgtggcggccgccgccggcgg
ggccgccggagcgatggcgaggattcgcccttcgtgatggccgccgcggtgccgaatgac
gaggacgccgaggaaatccagcccacgggcggtgaggaaccggtcgccggcgacagcgag
acggagccggccgcgactgccgaggagtcggtgacgcaggaaactccgtcggcggcagaa
gagtcggtgaacgaggacgttccggccgccgccgaggctgccgaaccggcgccgcgtccg
gccaccgggtccgagcccgaagccgttcagaccgacgcccaagcggacgcggaccaggaa
cccgccgcgccggcggacgagaccccggccggagccggcgagacagccggcgccgagcct
gttaccgaggccgaaccggaaccggcgcaggctgcggaagagaagaccgaagaaagcgtc
gatgccgcccagcccgtggaagtggcgcaacccgccaacgaggacgagccggagccggcc
gaagaagtggccgacgccggaccgcccaagcgcggctggtggcggcggcgcccgcggaac
tga
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