Rhizobiales bacterium NRL2: TEF_21855
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Entry
TEF_21855 CDS
T04419
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
rbm
Rhizobiales bacterium NRL2
Pathway
rbm03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
rbm00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
TEF_21855
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rbm03021
]
TEF_21855
03400 DNA repair and recombination proteins [BR:
rbm03400
]
TEF_21855
Enzymes [BR:
rbm01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
TEF_21855
Transcription machinery [BR:
rbm03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
TEF_21855
DNA repair and recombination proteins [BR:
rbm03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
TEF_21855
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
Peptidase_M23
Biotin_lipoyl_2
YnfE
Motif
Other DBs
NCBI-ProteinID:
ANK83149
LinkDB
All DBs
Position
complement(4661827..4665996)
Genome browser
AA seq
1389 aa
AA seq
DB search
MQDALQLFGQQQTAQSFDHIKIGLASPDQIRSWSFGEVKKPETINYRTFKPERDGLFCAR
IFGPIKDYECLCGKYKRMKYRGIICEKCGVEVTTQKVRRERMGHIELAAPVAHIWFLKSL
PSRIGLVLDMMLKDLERVLYFEQHIVIEPGLTPLKRFQLLTEEEFYDYQDEYGEDAFTAG
IGAEAVRDILMGLDLQEIRQDLRRELAETKSELKPKKIVKRLKLIEAFIESGNRPEWMIL
EVIPVLPPELRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLIELRAPDIIVRNEKRML
QEAVDALFDNGRRGRVITGANKRPLKSLADMLKGKQGRFRQNLLGKRVDYSGRSVIVVGP
ELKLHQCGLPKKMALELFKPFIYAKLELQGLAPTVKSAKKLVEKERPEVWDILEEVIREH
PVMLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCTAFNADFDGDQMAVHVPLSLEAQLE
ARVLMMSTNNILSPANGKPIIVPSQDIVLGLYYLSMQTDGAKGEGMIFATDDEIEYALDH
GVVAMHAKIKARWKTVDAEGNEVTELVEATPGRMLIARELPKNANVPFSLVNQLLTKKEI
GNMIDIVYRHAGQKETVMFCDRIMGLGFAHACWAGISFGKDDMIIPEAKEKLVGETNELI
KQYEQQYLDGLITTGEKYNKVVDAWMQCSDKVADEMMKGMESTRLANNGQPNSIYMMAHS
GARGSQAQMKQLAGMRGLMAKPSGEIIETPIISNFKEGLTVSEYFISTHGARKGLADTAL
KTANSGYLTRRLVDVAQDAVITEVDCGTTQGLLVREVVDGADVIAPLGERILGRTSAEDI
TDPVSGDVLYKAGTLLEEPEVEVISDAAVEAVRIRSVLTCENRQGVCAACYGRDLARGTP
VNQGEAVGVIAAQSIGEPGTQLTMRTFHIGGAAQAGENSSVEAAYDGSLKIEDRNVVEDS
QGRLVVMNRTTELVLLDQNGRERARHRVPYGTRLSKDHGKPVARGEKIAEWDPYTIPVIT
EKSGDVTYRDLVDGVSLRDVVDENTGIASKVVMDWKSQAGGNDLRPRITLRDEKGEVINL
ENDQEARYFLPVDAILSVQDGQNVHAGDVLARIPREGSKTRDITGGLPRVAELFEARRPK
DHAILAEVDGRVEFGKDYKAKRKLTIIPDDDSEEPVDYLIAKGRHILVHEGDQVRRGDYI
VDGNPAPHDILKILGVEALAEFLVNEIQEVYRLQGVKINDKHIEVITRQMLQKIEITRTG
DTTMLIGEQIDRHEYEAENAKVAKEGGEIARGEPVLLGITKASLQTRSFISAASFQETTR
VLTEASVNGKVDDLAGLKENVIVGRLIPAGTGAMMNEIRRVAAERDRKLAEESARPEAEE
PTAIPAAGE
NT seq
4170 nt
NT seq
+upstream
nt +downstream
nt
atgcaagacgccctgcaactgttcggtcagcagcagacggcccagagcttcgatcacatc
aagatcggcctggccagtcccgaccagatccgctcctggtccttcggcgaagtgaagaag
ccggagaccatcaactaccgcaccttcaagccggagcgggacggcctgttctgcgcccgc
atcttcggtccgatcaaggactacgagtgcctgtgcggcaagtacaagcgcatgaagtac
cgcggcatcatctgcgagaagtgcggcgtcgaggtcacgacccagaaggtccggcgcgag
cgcatgggccatatcgaactggccgcgcccgtcgcccacatctggttcctgaagtcgctg
cccagccgcatcggcctggtcctcgacatgatgctgaaggatctggaacgggtgctgtat
ttcgagcagcacatcgtcatcgagccgggtctgacgccgctgaagcgcttccagctcctc
accgaggaggagttctacgactaccaggacgagtacggcgaggacgccttcaccgccggc
atcggcgccgaggcggtgcgtgacatcctcatgggcctggacctgcaggaaatccgccag
gatctgcgccgcgagctggccgagaccaagtcggagctgaagcccaagaagatcgtcaag
cgcctgaagctgatcgaggccttcatcgaatccggcaaccgcccggagtggatgatcctg
gaggtcattcccgtgctgccgccggaactgcgcccgctggtgccgctggatggcggccgc
tttgcgacctccgacctcaacgatctctaccgccgggtgatcaaccgcaacaaccgcctg
aagcggctgatcgagctgcgcgcgccggacatcatcgtgcgcaacgagaagcgcatgctg
caggaggcggtcgacgccctgttcgacaacggccgccgcggccgcgtcatcaccggcgcc
aacaagcgcccgctgaagtcgcttgccgacatgctgaagggcaagcagggccgcttccgc
cagaacctgctgggcaagcgcgtcgactattcgggccgttcggtcatcgtggtcggtccg
gagctgaagctgcaccagtgcggcctgcccaagaagatggcgctggagctgttcaagccg
ttcatctacgccaagctggaactgcagggcctcgcgcccaccgtgaagtcggccaagaag
ctggtcgagaaggagcgcccggaggtctgggacatcctggaggaggtcatccgcgagcat
ccggtgatgctgaaccgggcgccgacgctccaccgcctcggcattcaggccttcgagccg
gtgctgatcgagggcaaggcgatccagctccatccgctggtctgcaccgcgttcaacgcg
gacttcgacggcgaccagatggcggtgcacgtgccgctgtccctggaagcccagctcgag
gcccgggtgctgatgatgtcgaccaacaacatcctctcgcccgccaacggcaagccgatc
atcgtccccagccaggacatcgtcctcggcctctactacctgtcgatgcagaccgacggc
gcgaagggcgagggcatgatcttcgccaccgacgacgagatcgaatatgcgctcgatcac
ggcgtcgtcgccatgcacgcgaagatcaaggcgcgctggaagacggtcgacgccgagggc
aacgaggtcaccgagctggtcgaggccacgccgggccgcatgctgatcgcgcgcgaactg
ccgaagaacgccaatgtccccttctccctggtcaatcagctgctgaccaagaaggagatc
ggcaacatgatcgacatcgtctaccggcacgccggtcagaaggagacggtcatgttctgc
gaccggatcatgggcctgggcttcgcccacgcctgctgggccggcatctccttcggcaag
gacgacatgatcatccccgaggccaaggagaagctggtcggcgagaccaacgagctgatc
aagcagtacgagcagcagtatctcgacggcctgatcaccacgggcgagaagtacaacaag
gtcgtcgacgcctggatgcagtgctccgacaaggtcgccgacgagatgatgaagggcatg
gaatcgacccgcctggccaacaacggccagccgaactcgatctacatgatggcccattcc
ggcgcccgcggctcgcaggcccagatgaagcagctcgccggcatgcgcggcctgatggcc
aagccttcgggcgagatcatcgagaccccgatcatctccaacttcaaggaaggcctgacc
gtgtcggagtacttcatctccacgcacggcgcccgcaagggcctggccgacaccgccctg
aagacggcgaattcgggctatctcacgcggcgtctggtggacgtggcgcaggacgcggtg
atcaccgaggtcgactgcggcaccacccaggggctgctggtgcgcgaagtggtcgacggc
gccgacgtcatcgcgccgctgggcgaacgtatcctgggccgtacctcggccgaggacatc
accgacccggtgagcggcgacgtgctctacaaggccggcaccctgctcgaggagccggag
gtcgaggtcatcagcgacgccgccgtggaggcggtgcgcatccgctccgtgctgacctgc
gagaaccgccagggcgtctgcgcggcctgctacggccgcgatctggcccggggcacgccg
gtgaaccagggcgaggcggtcggcgtcatcgcggcgcagtccatcggcgagccgggcact
cagctcaccatgcgcacgttccacatcggcggcgcggcgcaggcgggcgagaactccagc
gtcgaggcggcctatgacggctcgctgaagatcgaggaccgcaacgtggtcgaggattcg
cagggccggctggtggtgatgaaccgcaccaccgaactggtgctgctggatcagaacggc
cgcgagcgggcccgtcaccgcgtgccctatggcacccgtctgtcgaaggaccacggcaag
cccgtggcgcgcggcgagaagatcgccgaatgggatccctacacgatccccgtcatcacc
gagaagtcgggcgacgtcacctatcgcgatctggtcgacggcgtcagcctgcgcgacgtg
gtcgacgagaacacgggcatcgcctccaaggtcgtcatggactggaagagccaggcgggc
ggcaacgatctccggccccgcatcacgctccgcgacgagaagggcgaggtgatcaacctg
gagaacgatcaggaagcccgctacttcctgccggtggacgcgatcctgtcggtccaggat
ggccagaacgtccacgccggcgacgtgctggcgcgcataccgcgcgagggctcgaagaca
cgcgacatcaccggcggcctgccgcgggtggcggagctgttcgaggcccggcggccgaag
gaccacgccatcctggcggaggtcgacggccgggtggagttcggcaaggactacaaggcc
aagcgcaagctgacgatcatccccgatgacgacagcgaggagccggtcgactatctgatc
gccaagggccgccacatcctggtccacgaaggcgaccaggtccgccgcggcgactatatc
gtcgacggcaatccggcgccccacgacatcctgaagatcctgggcgtcgaggcgctggcc
gagttcctggtcaacgagatccaggaggtttaccggctgcagggcgtgaagatcaacgac
aagcacatcgaggtcatcacccgccagatgctgcagaagatcgagatcacgcgcaccggc
gacaccacgatgctcatcggcgagcagatcgaccgccacgagtacgaggccgagaacgcc
aaggtcgcgaaggagggcggcgagatcgccaggggcgagccggtgctgctgggcatcacc
aaggccagcctgcagacccggtcgttcatctccgcggcgtccttccaggagaccacgcgc
gtgcttacggaggcgtcggtcaacggcaaggtcgacgaccttgccggcctgaaggagaac
gtcatcgtcggccgtctgatccccgccgggacgggcgcgatgatgaacgagatccgccgg
gtggccgccgagcgcgaccgcaagctggcggaggagagcgccaggccggaggccgaggag
ccgaccgcgatccccgccgccggggagtag
DBGET
integrated database retrieval system
