Rubrivivax benzoatilyticus: RBXJA2T_03267
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Entry
RBXJA2T_03267 CDS
T04092
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
rbn
Rubrivivax benzoatilyticus
Pathway
rbn03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
rbn00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
RBXJA2T_03267
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rbn03021
]
RBXJA2T_03267
03400 DNA repair and recombination proteins [BR:
rbn03400
]
RBXJA2T_03267
Enzymes [BR:
rbn01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
RBXJA2T_03267
Transcription machinery [BR:
rbn03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
RBXJA2T_03267
DNA repair and recombination proteins [BR:
rbn03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
RBXJA2T_03267
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Apocytochr_F_C
Biotin_lipoyl_2
TMF_DNA_bd
Motif
Other DBs
NCBI-ProteinID:
EGJ09316
LinkDB
All DBs
AA seq
1409 aa
AA seq
DB search
MKGLLDLFKQFTPDEHFDAIKIGLASPEKIRSWSFGEVKKPETINYRTFKPERDGLFCAK
IFGPIKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIDLAAPCAHIWFLKSL
PSRLGLVLDMTLRDIERVLYFEAYVVVDPGMTPLKKFSIMSEDDYEAKRVEYGDEFIALM
GAEGIKKLLEEMDLDVEIDKLRNDMTGSELKIKKNSKRLKVMEAFKKSGIKPHWMILEVL
PVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLARLLELKAPEIIVRNEKRMLQEA
VDSLLDNGRRGKAMTGANKRALKSLADMIKGKSGRFRQNLLGKRVDYSGRSVIVVGPTLK
LHQCGLPKLMAIELFKPFIFSRLEAMGIATTIKAAKKEVEAGTPVVWDILEEVIKEHPVL
LNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCSAFNADFDGDQMAVHVPLSIEAQMEART
LMLASNNVLFPANGEPSIVPSQDVVLGLYYATRERINGKGEGMVFADLMELQRALDNGVV
EITAKINVRLTEWLKDKVTGEFVPETKLVETTVGRALLSQILPKGLPFSNLNKALKKKEI
SRLINVSFRKCGLKETVVFADKLLQSGFRLATRAGISIAIDDMLVPPQKHELIARAEKEV
KEIEQQYVSGLVTAGERYNKVVDIWGKTGDEVGKVMMSQLSKQKTIDRNGKEVDQESFNS
IYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGARK
GLADTALKTANSGYLTRRLVDVTQDLVVTEDDCGTQNGLAMRALVEGGEVIESLRDRVLG
RVTATEVLHLETQETLMGAGEMLDEDALDKLEAAGVDEVKVRTPLTCGTRFGLCAKCYGR
DLGRGGLVNVGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASRAAVASSVEAKSDGIIGFN
STMRYVTNGKGELVVIARSGEIIIADPHGRERERHKLPYGATLNVKPDQQVKAGTVLANW
DPLTRPIITEFAGKARFENVEEGVTVAKQVDEVTGLSTLVVIDPKRRGAAKVVRPQVKLL
DAQGVEVKIPGTDHAVTIGFPVGALIQVRDGQDLMPGEVLARIPMEGQKTRDITGGLPRV
AELFEARSPKDVGTLAEITGTVSFGKETKGKVRLQITDPDGKVYEELVPKEKNILVHEGQ
VVNRGELIVDGAADPQDILRLLGIEELARYIVDEVQDVYRLQGVKINDKHIEVIVRQMLR
RVQIVNPGDTGYIAGEQVERSELLDTNDRMRAEGKIPATHADVLLGITKASLSTDSFISA
ASFQETTRVLTEAAIMGKRDELRGLKENVIVGRLIPAGTGMAFHAARRAKEAMDESERRA
IALQEAEELAAVQLAGVDAASEAGDNAAE
NT seq
4230 nt
NT seq
+upstream
nt +downstream
nt
atgaagggactgctcgaccttttcaagcaattcacgcccgacgaacacttcgacgcgatc
aagatcgggctcgccagccccgagaagatccgctcgtggtcgttcggcgaagtgaagaag
cccgagacgatcaactaccgtacgttcaagcctgaacgtgacggcctgttctgcgccaag
atcttcggcccgatcaaggactacgagtgcctgtgcggcaagtacaagcgcctgaagcac
cgcggcgtgatctgcgagaagtgcggcgtcgaagtcacgcagaccaaggtgcgccgcgag
cgcatgggtcacatcgacctggccgcgccctgcgcccacatctggttcctgaagtcgctg
ccgtcgcgtctgggcctggtgctcgacatgacgctgcgcgacatcgagcgcgtgctgtac
ttcgaagcctacgtcgtcgtcgacccgggcatgacgccgctgaagaagttctcgatcatg
tccgaggacgactacgaggccaagcgcgtcgagtacggtgacgagttcatcgcgctgatg
ggtgccgagggcatcaagaagctgctcgaggagatggacctcgacgtcgagatcgacaag
ctccgcaacgacatgaccgggtcggagctgaagatcaagaagaactccaagcgcctcaag
gtgatggaggccttcaagaagtcgggcatcaagccgcactggatgatcctcgaggtcctg
ccggtgctgccgccggacctgcgtccgctggtgccgctggacggcggccgcttcgcgacg
tcggacctgaacgacctgtaccgccgcgtcatcaaccgcaacaaccgcctggcccgcctg
ctcgagctgaaggcgccggagatcatcgtccgcaacgaaaagcggatgctccaggaagcg
gtcgattcgctgctggacaacggccgccgcggcaaggcgatgaccggcgcgaacaagcgc
gcgctgaagtcgctggccgacatgatcaagggcaagagcggccgcttccgccagaacctg
ctgggcaagcgcgtcgactactccggccgttcggtcatcgtcgtcggcccgacgctcaag
ctgcaccagtgcggcctgcccaagctgatggcgatcgagctgttcaagccgttcatcttc
agccgcctcgaggcgatgggcatcgccacgacgatcaaggccgccaagaaggaagtcgaa
gccggcacgccggtggtgtgggacatcctggaagaggtcatcaaggagcacccggtcctg
ctgaaccgcgcgccgacgctgcaccgcctgggcatccaggcgttcgagccggtgctcatc
gaaggcaaggcgatccagctgcacccgctggtctgctcggcgttcaacgccgacttcgac
ggtgaccagatggccgtgcacgtgccgctgtcgatcgaagcgcagatggaagcccgcacg
ctgatgctggcctccaacaacgtgctgttcccggccaacggcgaaccgtcgatcgtgccg
tcgcaggacgtggtgctgggcctgtactacgccacccgcgagcgcatcaacggcaagggc
gaaggcatggtcttcgccgacctgatggagctgcagcgcgcgctggacaacggcgtcgtc
gagatcaccgccaagatcaacgtccgcctgaccgagtggctcaaggacaaggtcacgggc
gagttcgtgcccgagaccaagctcgtcgagaccaccgtcggccgtgcgctgctgtcgcag
atcctgcccaagggcctgccgttctcgaacctgaacaaggcgctgaagaagaaggagatc
tcgcgtctcatcaacgtcagcttccgcaagtgcggcctgaaggagacggtggtcttcgcc
gacaagctgctgcaaagcggcttccgcctcgcgacgcgcgccggcatctcgatcgccatc
gacgacatgctggtgccgccgcagaagcacgagctcatcgcccgtgccgagaaggaggtc
aaggagatcgagcagcagtacgtctcgggtctcgtgaccgccggcgagcgctacaacaag
gtggtcgacatctggggcaagaccggcgacgaggtcggcaaggtcatgatgtcgcagctg
tccaagcagaagaccatcgaccgcaacggcaaggaagtcgaccaggagtcgttcaactcc
atctacatgatggccgactccggggcgcggggctccgcggcgcagatccgccagctggcc
ggcatgcgcggcctgatggccaagccggacggctcgatcatcgagacgccgatcacggcg
aacttccgcgaaggcctgaacgttctgcagtacttcatctccacccacggtgcccgcaag
ggcctggcggacacggcgctgaagaccgcgaactcgggttacctgacgcgccgtctggtc
gacgtgacccaggatctggtcgtcaccgaggacgattgcggcacccagaacggcctggcc
atgcgtgccctggtcgagggcggtgaagtcatcgagtcgctgcgcgaccgcgtgctcggc
cgcgtcaccgcgaccgaggtcctgcacctcgagacgcaggaaacgctgatgggcgccggc
gagatgctcgacgaggacgcgctcgacaagctcgaggccgccggcgtcgacgaggtcaag
gtgcgcacgccgctgacctgcggcacgcgcttcggcctgtgcgccaagtgctacggccgc
gacctgggccgtggcggcctggtcaacgtcggcgaggcggtcggtgtcatcgccgcccag
tcgatcggcgagccgggcacgcagctgacgatgcggaccttccacatcggcggtgcggcg
tcgcgcgcggcggtcgcgtcgagcgtcgaggccaagtccgacggcatcatcggcttcaac
agcacgatgcgctacgtcacgaacggcaagggcgaactcgtcgtcatcgcgcgttcgggc
gagatcatcatcgccgacccgcacggccgcgagcgcgagcgccacaagctgccgtacggc
gcgacgctcaacgtcaagcccgaccagcaggtcaaggccggcaccgtgctggccaactgg
gacccgctgacccgcccgatcatcaccgagttcgccggcaaggcgcgcttcgagaacgtc
gaggaaggcgtcaccgtcgccaagcaggtcgacgaggtcaccggtctgtcgacgctggtc
gtcatcgacccgaagcgccgcggcgcggccaaggtcgtgcgcccgcaggtcaagctgctg
gacgcgcagggcgtcgaggtcaagatcccgggcaccgaccacgcggtgacgatcggcttc
ccggtcggcgcgctgatccaggtgcgcgacggtcaggacctgatgccgggcgaggtgctg
gcgcgcatcccgatggaaggccagaagacccgcgacatcaccggcggtctgccgcgtgtg
gccgagctgttcgaagcccgctcgccgaaggacgtcggcacgctggccgagatcaccggc
acggtgtcgttcggcaaggagaccaagggcaaggttcgcctgcagatcaccgatccggac
ggcaaggtctacgaagagctggtgcccaaggagaagaacatcctggtgcacgaaggccag
gtcgtgaaccggggcgagctgatcgtcgacggcgcggcggatccgcaggacatcctgcgc
ctgctgggcatcgaggagctggcgcgctacatcgtcgacgaggtccaggacgtctaccgt
ctgcagggcgtgaagatcaacgacaagcacatcgaggtgatcgttcgccagatgctgcgc
cgcgtgcagatcgtcaacccgggcgacaccggctacatcgccggcgagcaggtcgagcgt
tcggagctgctggacaccaacgaccgcatgcgcgccgagggcaagatcccggcgacgcac
gccgacgtgctgctcggtatcacgaaggccagcctgtcgaccgactcgttcatctccgcg
gcctccttccaggagaccacccgcgtgctgaccgaggcggcgatcatgggcaagcgcgac
gaactgcgcggcctgaaggagaacgtcatcgtcggccgcctgatcccggcgggcaccggc
atggcgttccacgccgcgcgtcgcgccaaggaggcgatggacgagagcgagcgtcgtgcg
atcgcgctgcaggaggccgaggaactggccgcggtgcaactggccggcgtcgatgcggcc
agcgaggcgggggacaacgcggccgagtga
DBGET
integrated database retrieval system
