Rubrivivax benzoatilyticus: RBXJA2T_03623
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Entry
RBXJA2T_03623 CDS
T04092
Name
(GenBank) diaminopimelate decarboxylase
KO
K01586
diaminopimelate decarboxylase [EC:
4.1.1.20
]
Organism
rbn
Rubrivivax benzoatilyticus
Pathway
rbn00300
Lysine biosynthesis
rbn00470
D-Amino acid metabolism
rbn01100
Metabolic pathways
rbn01110
Biosynthesis of secondary metabolites
rbn01120
Microbial metabolism in diverse environments
rbn01230
Biosynthesis of amino acids
Module
rbn_M00016
Lysine biosynthesis, succinyl-DAP pathway, aspartate => lysine
Brite
KEGG Orthology (KO) [BR:
rbn00001
]
09100 Metabolism
09105 Amino acid metabolism
00300 Lysine biosynthesis
RBXJA2T_03623
09106 Metabolism of other amino acids
00470 D-Amino acid metabolism
RBXJA2T_03623
Enzymes [BR:
rbn01000
]
4. Lyases
4.1 Carbon-carbon lyases
4.1.1 Carboxy-lyases
4.1.1.20 diaminopimelate decarboxylase
RBXJA2T_03623
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Orn_Arg_deC_N
Orn_DAP_Arg_deC
Ala_racemase_N
Motif
Other DBs
NCBI-ProteinID:
EGJ09386
LinkDB
All DBs
AA seq
415 aa
AA seq
DB search
MNEPIPRAVPVHAPMDQFPVRDGELVVGGERLSLLAARVGATPFYAVDRGLLRRRVAELR
AALPAGVKLHYAMKANPMPALVAFMAGLVDGIDVASGGELKVALDAGADAAEVSFAGPGK
RDAELRQAVAARVLVNVESERELAVLAAAAAEFGVPARVAVRVNPDFELKGSGMRMGGGA
KQFGVDADRVPALLARIGELGLAFEGFHLFAGSQNLRAEAICEAQRQSYELALRLAAHAP
APLRFLNLGGGFGIPYFPGETRLDLAPIGANLQALAERARTELPEASLVIELGRYFVGEA
GVYVTRVVDRKLSRGQVFLVCDGGLNHHLAASGNFGQVVRKNYPVTVGNRLGDEARETAT
AVGPLCTPLDLLADRMSLPPADVGDLVVVFQSGAYGASASPQAFLGHAPVTEVLV
NT seq
1248 nt
NT seq
+upstream
nt +downstream
nt
atgaacgaaccgattccccgcgccgtcccggtgcatgcgccgatggaccagttcccggtg
cgcgacggcgagctcgtcgtcggcggcgagcgcctgagcctgctggccgcgcgtgtcggc
gcgacgccgttctacgccgtcgaccgcggcctgctgcgccggcgtgtcgccgagctgcgc
gcggcgctgccggccggcgtcaagctgcactacgcgatgaaggccaacccgatgccggcg
ctggtcgccttcatggccgggctggtcgacggcatcgacgtcgcctccggcggcgagctg
aaggtggcgctggatgccggtgccgatgcggccgaggtcagcttcgccgggccgggcaaa
cgcgacgccgagctgcgccaggcggtggcggcgcgggtgctggtcaacgtcgagtccgaa
cgtgagctggcggtgctggccgcggcggcggccgagttcggcgtgccggcgcgggtggcg
gtgcgcgtgaaccccgacttcgagctgaagggctcgggcatgcgcatggggggtggcgcg
aaacagttcggcgtcgacgccgaccgcgtgccggcgctgctggcgcgcatcggcgagctg
gggctggcgttcgagggcttccacctgttcgccggctcgcagaacctgcgcgccgaggcg
atctgcgaggcccagcgccagtcctacgaactcgcgctgcggctggccgcgcacgcgccg
gcgccgctgcgtttcctgaacctgggcggcggtttcggcatcccgtacttccccggcgag
acccggctggacctggcgccgatcggcgccaacctgcaggcgctggccgagcgtgcgcgc
accgagctgcccgaggccagcctcgtcatcgagctcggccgctacttcgtcggcgaggcc
ggcgtctatgtcacgcgggtcgtcgaccgcaagctgtcgcgcgggcaggtcttcctggtc
tgcgacggcggcctgaaccaccacctcgcggccagcggcaacttcggccaggtggtgcgc
aagaactatccggtgacggtgggcaaccgcctcggcgacgaggcccgcgagaccgccacc
gccgtcggcccgctgtgcaccccgctggacctgctggccgaccgcatgagcctgcccccg
gccgacgtcggcgacctcgtcgtcgtcttccagtccggcgcctacggcgccagcgccagc
ccgcaggccttcctcggccacgcccccgtcaccgaggtgctcgtctaa
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