Rubrivivax benzoatilyticus: RBXJA2T_03803
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Entry
RBXJA2T_03803 CDS
T04092
Symbol
gyrB
Name
(GenBank) DNA gyrase subunit B
KO
K02470
DNA gyrase subunit B [EC:
5.6.2.2
]
Organism
rbn
Rubrivivax benzoatilyticus
Brite
KEGG Orthology (KO) [BR:
rbn00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
rbn03032
]
RBXJA2T_03803 (gyrB)
03400 DNA repair and recombination proteins [BR:
rbn03400
]
RBXJA2T_03803 (gyrB)
Enzymes [BR:
rbn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.2 DNA topoisomerase (ATP-hydrolysing)
RBXJA2T_03803 (gyrB)
DNA replication proteins [BR:
rbn03032
]
Prokaryotic type
DNA Topoisomerases
RBXJA2T_03803 (gyrB)
DNA repair and recombination proteins [BR:
rbn03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
RBXJA2T_03803 (gyrB)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_gyraseB
GyrB_insert
DNA_gyraseB_C
Toprim
HATPase_c
GyrB_hook
HATPase_c_3
Motif
Other DBs
NCBI-ProteinID:
EGJ09422
LinkDB
All DBs
AA seq
829 aa
AA seq
DB search
MSDSNQTPPNDYGASSIQILEGLEAVRKRPGMYIGDTSDGTGLHHLVFEVVDNSIDEALA
GYCDDIVVTIHSDNSISVTDNGRGIPTGVKMDDKHEPRRSAAEIALTELHAGGKFNQNSY
KVSGGLHGVGVSCVNALSKWLRLTVRRDGKVHRVEFKRGVTQDRVIEVRDGVETSPMKIV
GDTDKRGTEVHFLPDDEIFSHVDFHYDVLAKRLRELSFLNNGVKIRLVDERNAKEDNFAF
AGGVKGFVEFINQGKKVLHPNVFHAMGEKASEQGTTIGVEVAMQWNDSYSESVLCFTNNI
PQRDGGTHLTGLRAAMTRVINKYIEDNELAKKAKVEVAGDDMREGLACVVSVKVPEPKFS
SQTKDKLVSSEVRAPVEDIVGRLLTDWLLENPNDAKIICGKIVDAARAREAARKAREMTR
RKGVLDGIGLPGKLADCQEKDPALCELYLVEGDSAGGSAKQGRDRKFQAILPLRGKILNV
EKARYEKLLSSDAIVTLITALGTGIGPEDFNVDKLRYHRIIVMTDADVDGAHIRTLLLTF
FYRQMHELVERGYIYIAQPPLYKVKQGKHEQYLKDGQELDAFLLKVALDGATVLPDGLAE
GGRAALQGEALEQLARKYIVANNVVQRLGNWMDLDALRAIANGLELDVDSAEAAQASAAA
LQAALKDATVEFHVDPRTDKPLLRIGRRHHGNVKTSVITQEFLHGADYAALAEAGRTFKG
LLGEEAVVRRGEGEKQKEQKVADFRAAMDWLMVQAEGAVARQRYKGLGEMNPEQLWETTM
DPNVRRLLRVQIEDAIEADRVFTMLMGDEVEPRREFIESNALRAGNIDV
NT seq
2490 nt
NT seq
+upstream
nt +downstream
nt
atgagcgattcgaaccaaaccccgccgaacgactacggcgccagcagcatccagatcctc
gaaggcctggaggcggtgcgcaagcggccgggcatgtacatcggcgacacctccgacggc
accggcctgcatcacctggtcttcgaagtcgtcgacaactcgatcgacgaggcgctggcc
ggctactgcgacgacatcgtcgtcacgatccacagcgacaactcgatcagcgtcaccgac
aacggccgcggcatcccgaccggcgtcaagatggacgacaagcacgagccccggcgctcg
gccgccgagatcgcgctgaccgagctgcacgccggcggcaagttcaaccagaacagctac
aaggtctcgggcggcctgcacggcgtgggcgtgtcctgcgtcaacgcgctgtccaagtgg
ctgcgcctgacggtgcgccgcgacggcaaggtgcatcgtgtcgagttcaagcgcggcgtc
acgcaggaccgcgtcatcgaggtccgcgacggtgtcgagaccagcccgatgaagatcgtc
ggcgacaccgacaagcgcggcaccgaagtccacttcctgcccgacgacgagatcttcagc
cacgtcgacttccactacgacgtgctggccaagcgcctgcgcgagctctcgttcctgaac
aacggcgtcaagatccgcctcgtcgacgagcgcaacgcgaaggaggacaacttcgccttc
gccggcggcgtgaagggcttcgtcgagttcatcaaccagggcaagaaggtcctgcacccg
aacgtcttccacgcgatgggcgagaaggccagcgagcagggcacgacgatcggcgtcgaa
gtggcgatgcagtggaacgacagctacagcgagagcgtcctctgcttcaccaacaacatc
ccgcagcgtgacggcggcacccacctgaccgggctgcgcgcggcgatgacacgcgtcatc
aacaagtacatcgaggacaacgagctggccaagaaggccaaggtcgaggtcgccggcgac
gacatgcgcgagggcctggcctgcgtcgtcagcgtcaaggtgccggagcccaagttctcc
agccagaccaaggacaagctcgtctccagcgaggtgcgcgcgccggtcgaggacatcgtc
ggccggctgctgaccgactggctgctggagaacccgaacgacgccaagatcatctgcggc
aagatcgtcgacgccgcgcgcgcccgcgaagccgcgcgcaaggcgcgcgagatgacgcgc
cgcaagggcgtgctcgacggcatcggcctgccgggcaagctggccgactgccaggagaag
gacccggcgctgtgcgagctgtacctggtggagggcgactccgccggcggcagcgccaag
cagggccgcgaccgcaagttccaggcgatcctgccgctgcgcggcaagatcctgaacgtc
gagaaggcgcgctacgagaagctgctgtccagcgacgccatcgtcacgctgatcaccgcg
ctgggcaccggcatcgggcccgaggacttcaacgtcgacaagctgcgctaccaccgcatc
atcgtgatgaccgacgccgacgtcgacggcgcccacatccgcacgctgctgctgaccttc
ttctaccgccagatgcacgagctggtggagcgcggctacatctacatcgcccagccgccg
ctgtacaaggtgaagcagggcaagcacgagcagtacctgaaggacgggcaggagctcgac
gccttcctgctgaaggtggcgctggacggcgccaccgtgctgcccgacggcctggccgaa
ggcggccgcgcggcgctgcagggcgaggcgctggagcagctggcgcgcaagtacatcgtc
gccaacaacgtcgtgcagcgcctgggcaactggatggacctggacgcgctgcgcgccatc
gccaacggcctggagctggacgtcgacagcgccgaggccgcgcaggccagcgccgcggcg
ctgcaggcggcgctgaaggacgcgacggtggagttccacgtcgacccgcgcaccgacaag
ccgctgctgcgcatcggccgccgccaccacggcaacgtcaagaccagcgtcatcacgcag
gagttcctgcacggcgccgactacgccgcgctggccgaggccggccgcaccttcaagggc
ctgctcggcgaggaagccgtggtgcgccgcggcgagggtgagaagcagaaggaacagaag
gtcgccgacttccgcgccgcgatggactggctgatggtccaggccgaaggcgccgtcgcc
cgccagcgttacaagggcctgggcgagatgaaccccgagcagctgtgggagacgacgatg
gaccccaacgtccgccgcctgctgcgcgtgcagatcgaggacgccatcgaggccgaccgc
gtcttcacgatgctgatgggcgacgaggtggagccgcggcgcgagttcatcgagagcaat
gcgttgagggcggggaatatcgacgtttaa
DBGET
integrated database retrieval system
