Rubrivivax benzoatilyticus: RBXJA2T_05003
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Entry
RBXJA2T_05003 CDS
T04092
Name
(GenBank) peptidoglycan-binding domain-containing protein
KO
K21470
L,D-transpeptidase YcbB
Organism
rbn
Rubrivivax benzoatilyticus
Brite
KEGG Orthology (KO) [BR:
rbn00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
rbn01002
]
RBXJA2T_05003
01011 Peptidoglycan biosynthesis and degradation proteins [BR:
rbn01011
]
RBXJA2T_05003
Peptidases and inhibitors [BR:
rbn01002
]
Cysteine peptidases
Family C82
RBXJA2T_05003
Peptidoglycan biosynthesis and degradation proteins [BR:
rbn01011
]
Peptidoglycan biosynthesis and degradation
Transpeptidase
RBXJA2T_05003
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Scaffold
YkuD
PG_binding_1
PG_binding_3
Motif
Other DBs
NCBI-ProteinID:
EGJ09662
LinkDB
All DBs
AA seq
547 aa
AA seq
DB search
MVCGPFCGAGRPRAVTMATLARHSAEADNGRMRPAPFPRRIAALALLFASAAVQASPWFD
ADARPGPRAHEAVALLAAAPEHGLVAEDYRAAALAQALDAAAHTPSHEAATRLEAELDAA
MRRYLSDLHQGRLDPRTLYRSLTLPERPPFDARAVLDAGLAAGSLALAVRRAEPVLPQYA
ELRQALARYRTLEHDPAWAAPLPPLPQVGRTRKLEPGAAWPGLPALAARLVALGDLPAGP
HAGTVYAEPLVGGVRRFQQRHGVSADGVIGAATFSRLEVKPAARAEQLVLALERLRWTPL
LESRRMVVVNIPEFVLRAYEVQDGRITVVQRMRVVVGQALDKRTPLIDAQMRAIEFSPYW
NVPPSIVRAETLPKLRRDPDYLAREGFEFVAGDGSVHGEVSAEALDALAAGRWRIRQRPG
PRNALGDIKFVFPNAEQIYLHHTPSTALFARDRRDFSHGCVRIEDPLALAMFVLRDQPDW
PEARIREAMDAGESRTLRLATPVRVLIAYGTALVKDGQVYFFDDIYRQDPRLQAALRERA
APAVRAD
NT seq
1644 nt
NT seq
+upstream
nt +downstream
nt
atggtctgcgggccattctgcggcgccggccggccgcgcgccgtcaccatggcgacgctg
gcccggcacagtgccgaggcggacaatggccgcatgcgccctgccccgttcccacgccgc
atcgccgcgctggcgctgctgttcgccagcgccgcggtgcaggcctcgccgtggttcgac
gccgacgcccgccccggcccgcgggcgcacgaggccgtcgcgctgctggccgccgcaccc
gagcacggcctcgtcgccgaggactaccgcgccgccgcactggcccaggcgctggacgcc
gccgcgcacacgccctcgcacgaggccgccacgcggctggaagccgagctcgacgccgcg
atgcgccgctacctgtccgacctgcaccagggccggctcgacccgcgcacgctgtaccga
tcgctgacgctgcccgaacgcccgcccttcgacgcgcgcgccgtgctcgacgccggcctg
gccgccggttcgctggcgctggccgtgcgccgcgccgagccggtgctgccgcagtacgcc
gagctgcgccaggcgctggcgcgttaccgcacgctggagcacgacccggcctgggcggcg
ccgctgccaccgctgccgcaggtcggccgcacgcgcaagctggagccgggtgccgcctgg
cccggcctgccggcgctggccgcacgcctggtcgcactcggcgacctgccggccggcccg
catgccggcacggtctacgccgagccgctggtcggcggtgtgcgccgcttccagcagcgc
cacggcgtcagcgccgacggcgtcatcggggcggcgactttttcgcgcctggaggtcaaa
ccggcggcccgcgccgaacagctcgtgctggcgctggagcggctgcgctggacgccgctg
ctcgagtcgcggcgcatggtcgtggtcaacatcccggagttcgtgctgcgcgcctacgag
gtgcaggacgggcggatcaccgtcgtgcagcgcatgcgcgtcgtcgtcggccaggcgctg
gacaaacgcacgccgctgatcgacgcgcagatgcgcgccatcgagttcagcccctactgg
aacgtgccgccgtcgatcgtgcgtgccgagaccctgcccaagctgcgccgcgatccggac
tacctggcacgcgaaggtttcgagttcgtcgccggcgacggcagcgtgcacggcgaggtc
tcggccgaggcgctggacgcgctggctgccgggcgctggcgcatccgccagcggcccggg
ccgcgcaacgcgctgggcgacatcaagttcgtcttccccaacgccgagcagatctacctg
catcacacgccgtcgaccgcgctgttcgcacgcgaccggcgcgacttcagccacggctgc
gtgcgcatcgaggacccgctggcgctggcgatgttcgtgctgcgggaccagcccgactgg
cccgaggcgcgcatccgcgaggcgatggacgccggcgagtcgcgcacgctgcggctcgcg
acgccggtgcgggtgttgatcgcctacggcaccgcgctcgtcaaggacgggcaggtgtat
ttcttcgacgatatctaccgtcaggacccgcgcctgcaggccgcgctgcgcgaacgcgcc
gcgcccgccgtgcgcgccgactga
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