Rubrivivax benzoatilyticus: RBXJA2T_08950
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Entry
RBXJA2T_08950 CDS
T04092
Name
(GenBank) DEAD/DEAH box helicase domain-containing protein
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
rbn
Rubrivivax benzoatilyticus
Pathway
rbn03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rbn00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
RBXJA2T_08950
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rbn03019
]
RBXJA2T_08950
Enzymes [BR:
rbn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
RBXJA2T_08950
Messenger RNA biogenesis [BR:
rbn03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
RBXJA2T_08950
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
P-loop_SecA
HI1480
AAA_22
Utp25_C
Motif
Other DBs
NCBI-ProteinID:
EGJ10442
LinkDB
All DBs
AA seq
500 aa
AA seq
DB search
MNFSDLGLAEPLLRAVREQGYDVPTPIQAQAIPAVLQGGDLLAGAQTGTGKTAGFTLPML
QRLSASKPVRDSRGRIAVRALVLTPTRELAAQVEESVRAYGKYLPLTSMVMFGGVGMQPQ
IDRLRKGVDILVATPGRLLDHHGQGTLDLSQVQILVLDEADRMLDMGFIHDIKKVLAVLP
QKKQSLLFSATFSDEIKALADRLLNQPALIEVARRNATADTIAQKVHPVGREKKKELLAH
LIRQGDWHQVLVFTRMKHGANRLAEYLNEQGITAMAIHGNKSQGARTKALAEFKAGTLQV
LVATDIAARGIDIDQLPHVVNYELPNVPEDYVHRIGRTGRAGASGEAVSLVCLDEEIFLR
DIQRLIKREIPVQVIPGFEPPAGERAEPIVLGRMTIGVGGTRRNAGGGMPSRGGRPQGAS
GGGNGGGGQRPAGAGGAVVRRRRAAGPRTATAAAAPRKARAGRVAERRPPEAPMKKAPRG
AFCLSAAGCPAAPCHSPPNL
NT seq
1503 nt
NT seq
+upstream
nt +downstream
nt
atgaatttttccgatctcggccttgccgagccgctgctgcgcgccgttcgcgaacagggc
tacgacgtgccgaccccgatccaggcccaggcgatcccggcggtgctgcaaggcggcgac
ctgctcgccggcgcgcagaccggcaccggcaagaccgccggtttcacgctgccgatgctg
cagcgtctgtccgcttccaagccggtgcgcgactcccgcggccgcatcgccgtgcgcgcg
ctggtgctgacgccgacacgtgaacttgccgcccaggtcgaggaaagcgttcgtgcctac
ggcaagtacctgccgctgaccagcatggtgatgttcggcggcgtcggcatgcagccgcag
atcgaccgcctccgcaaaggcgtcgacatcctcgtcgcgacgcccggccggctgctggac
caccatggccagggcacgctggacctgtctcaggtgcagatcctggtgctcgacgaagcc
gaccgcatgctcgacatgggcttcatccacgacatcaagaaggtgctcgcggtgctgccc
cagaagaagcagagcctgctcttctcggcgaccttcagcgacgagatcaaggccctggcc
gaccgcctgctgaaccagccggcgctgatcgaggtcgcgcgccgcaacgccaccgccgac
accatcgcgcagaaggtgcacccggtcgggcgcgagaagaagaaggagctgctggcgcac
ctgatccgccagggcgactggcaccaggtgctggtcttcacgcgcatgaagcacggcgcc
aaccgcctggccgagtacctgaacgagcagggcatcacggcgatggcgatccacggcaac
aagagccagggcgcgcgcaccaaggcgctggccgagttcaaggccggcacgctgcaggtg
ctggtggccaccgacatcgccgcgcgcggcatcgacatcgaccagctgccgcacgtcgtc
aactacgagctgccgaacgtgccggaagactacgttcaccgcatcggccgcaccggccgt
gccggcgccagcggcgaggcggtctcgctggtctgcctggacgaggagatcttcctgcgc
gacatccagcgcctgatcaagcgcgagatcccggtgcaggtgatccccggcttcgagccc
ccggccggcgagcgcgccgagccgatcgtgctcggccgcatgaccatcggcgtcggcggc
acgcgccgcaacgccggtggtggcatgccctcgcgcggcggccggccgcaaggcgcgtcg
ggcggtggcaacgggggtggtggccagcgcccggccggcgccgggggcgcggtggtgcgt
cgtcgccgcgcggcgggtcctcgcacggccacggcggcggccgcgcctcgcaaggcccgc
gcgggccgcgtcgctgagcggcggcctcccgaggcaccaatgaaaaaggccccgcgaggg
gccttttgcctgtctgccgccggttgcccggcggcaccgtgtcactcgccgccgaacttg
tag
DBGET
integrated database retrieval system
