Rubrivivax benzoatilyticus: RBXJA2T_09327
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Entry
RBXJA2T_09327 CDS
T04092
Name
(GenBank) ATP-dependent DNA helicase UvrD
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
rbn
Rubrivivax benzoatilyticus
Pathway
rbn03420
Nucleotide excision repair
rbn03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
rbn00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
RBXJA2T_09327
03430 Mismatch repair
RBXJA2T_09327
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rbn03400
]
RBXJA2T_09327
Enzymes [BR:
rbn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
RBXJA2T_09327
DNA repair and recombination proteins [BR:
rbn03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
RBXJA2T_09327
MMR (mismatch excision repair)
Other MMR factors
RBXJA2T_09327
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
PcrA_UvrD_tudor
AAA_12
Viral_helicase1
AAA_30
Succ_CoA_lig
Motif
Other DBs
NCBI-ProteinID:
EGJ10516
LinkDB
All DBs
AA seq
784 aa
AA seq
DB search
MHLQDAQLLRNLNPEQLAAVTLPAVPALILAGAGSGKTRVLTTRIAWLLATNQVSPGGVL
AVTFTNKAAKEMLTRLGTMLPFAVRGMWIGTFHGLCNRLLRAHWKAAGLPQSFQILDSGD
QLSAVKRVVKAMNLDEERFVPKQVAWFIAAQKEEGRRPAAVEAFDEHTRKLVQVYEAYEE
QCRREGVVDFAELMLRSYELLRDDEPLREHYRRRFGHVLVDEFQDTNRLQYAWLKMFAPP
GAQGQGVFAVGDDDQSIYAFRGARVGNMADFEREYRVRSVIKLEQNYRSFGNILDAANAL
IAHNAQRLGKNLRTDAGPGEPIRVQEAASDYAEAQWLLDEARELHRGGMPRSEIAVLYRS
NAQSRVIESALFNAGIPYRVYGGLRFFERAEVKHALAYLRLLENPDDDTSFLRVVNFPAR
GIGARSIEQLQDAARASGRSLAQSVGAVPGKAGLNLQGFVHKLDTMRSATQGLTLREIIE
HVVHESGLLDFYRTEKEGQDRIENLQELVNAAESFVTQEGFGKDAVALPLDEHGPGTLAG
GGETAIPSPDAETGEIVSPLAAFLTHASLEAGDNQAQAGTDAVQLMTVHSAKGLEFDAVF
ITGIEEGLFPHEQSLSDADGVEEERRLMYVAITRARKRLYLSFSQTRMLHGQTRYNVKSR
FFDELPEGALKWLTPRQQGFGSGYAREYRQAWDRGQGLSGIVGAGRVERAEPWQQPVPFT
PKAPAAPAGQAPLRTGQAVFHTKFGEGVVVTLEGSGEDARAQVRFGRHGVKWLLLAMAKL
TPIE
NT seq
2355 nt
NT seq
+upstream
nt +downstream
nt
atgcatctccaagacgcgcagctgctgcgcaacctgaatcccgaacagctcgccgccgtc
acgctgccggccgtgcccgcgctgatcctcgccggtgccggctccggcaagacgcgcgtg
ctgacgacgcgcatcgcctggctgctggccaccaaccaggtgtcgccgggcggcgtgctc
gccgtcaccttcacgaacaaggccgccaaggagatgctgacgcggctgggcacgatgctg
ccgttcgccgtgcgcggcatgtggatcggcaccttccacggcctgtgcaaccgcctgctg
cgcgcccactggaaggccgccgggctgccgcagagcttccagatcctggacagcggcgac
cagctctcggccgtcaagcgggtcgtcaaggcgatgaacctcgacgaggagcgtttcgtg
cccaagcaggtggcgtggttcatcgccgcccagaaggaagagggccgccgcccggccgcc
gtcgaggccttcgacgagcacacgcgcaagctggtgcaggtctacgaggcctacgaggag
cagtgccggcgcgaaggcgtcgtcgacttcgccgagctgatgctgcgcagctacgagctg
ctgcgcgacgacgagccgctgcgcgagcactaccgccgccgcttcggccacgtgctcgtc
gacgagttccaggacaccaaccggctgcagtacgcctggctgaagatgttcgcgccgccg
ggcgcccagggccagggcgtgttcgccgtcggcgacgacgaccagagcatctacgccttc
cgcggcgcgcgggtcggcaacatggccgacttcgagcgcgagtaccgcgtcaggagcgtc
atcaagctcgagcagaactaccgctcgttcggcaacatcctcgacgccgccaacgcgctg
atcgcgcacaacgcgcagcgcctgggcaagaacctgcgcaccgacgccggccccggcgag
ccgatccgcgtgcaggaggcggcgagcgactacgccgaggcccagtggctgctggacgag
gcgcgcgagctgcaccgcggcggcatgccgaggagcgagatcgccgtgctctaccgcagc
aacgcgcagagccgcgtcatcgagagcgcgctgttcaacgccggcattccgtaccgcgtc
tacggcggcctgcgcttcttcgagcgcgccgaagtcaagcacgcgctggcctatctgcgg
ctgctggagaaccccgacgacgacaccagcttcctgcgtgtcgtgaacttcccggcgcgt
ggcatcggcgcgcgttcgatcgagcagctgcaggacgcggcgcgggccagcggccgcagc
ctggcgcagagcgtcggcgcggtgccgggcaaggccggcctgaacctgcagggcttcgtg
cacaagctcgacacgatgcgcagcgccacgcaaggcctgacgctgcgcgagatcatcgag
cacgtggtgcatgagagcgggctgctggacttctaccgcaccgagaaggaaggccaggac
cgcatcgagaacctgcaggaactggtcaacgccgccgagagcttcgtcacccaggaaggc
ttcggcaaggacgcggtggcgctgccgctggacgaacacggccccggcacgctggccggc
ggcggcgagaccgcgatcccgtcacccgacgccgagaccggcgagatcgtctcgccgctg
gcggccttcctgacgcacgcctcgctggaagccggcgacaaccaggcccaggccggcacc
gacgccgtgcagctgatgacggtgcactcggccaagggcctggagttcgacgccgtgttc
atcaccggcatcgaggaaggcctgttcccgcacgaacagtcgctgtccgacgccgacggc
gtcgaggaggagcggcggctgatgtacgtcgccatcacgcgggcccgcaaacgcctgtac
ctgagcttcagccagacgcgcatgctgcacggccagacgcgctacaacgtcaagagccgc
ttcttcgacgagctgcccgagggcgcgctgaagtggctgacgccgcgccagcagggtttc
ggctcgggctacgcgcgcgagtaccgccaggcctgggaccgcggccaggggctgtcgggc
atcgtcggcgccgggcgcgtcgagcgtgccgagccctggcagcagccggtgccgttcacg
cccaaggcgccggcggcgccggccgggcaggcgccgctgcgcaccggccaggcggtgttc
cacaccaagttcggcgagggcgtggtcgtcacgctcgaaggcagcggcgaggatgcgcgc
gcccaggtgcgtttcggccgccacggcgtcaagtggctgctgctggcgatggccaagctg
acgccgatcgagtga
DBGET
integrated database retrieval system
