Rubrivivax benzoatilyticus: RBXJA2T_13259
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Entry
RBXJA2T_13259 CDS
T04092
Name
(GenBank) putative RNA polymerase sigma N (sigma 54) factor transcription regulator protein
KO
K03092
RNA polymerase sigma-54 factor
Organism
rbn
Rubrivivax benzoatilyticus
Pathway
rbn02020
Two-component system
rbn02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
rbn00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
RBXJA2T_13259
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
RBXJA2T_13259
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rbn03021
]
RBXJA2T_13259
Transcription machinery [BR:
rbn03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
RBXJA2T_13259
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Sigma54_DBD
Sigma54_CBD
Sigma54_AID
HTH_38
HTH_IclR
HTH_23
Motif
Other DBs
NCBI-ProteinID:
EGJ11298
LinkDB
All DBs
AA seq
500 aa
AA seq
DB search
MKPSLQVRLSQHLALTPQLQQSIRLLQLSTLELHQEVEQMLEQNPFLEMDEDAATPFDAP
AERATVDRVAERDDGDGAAEPAPAEVDAAEFGTTERDDWENGTERDDFDGIRETPAAAAP
EGDDDLDPQERRAGAGTLQDHLRRQIAGMRLSAEDAAALHVLIESLDDDGYLADPLEDIA
ARLADMLDLDDEEQREALADRLQCALRWLQSLEPTGVGARSLSECLVLQLRTTPRCEARE
VAIRICEHSLELLARRDVKKLTAATGAGEDLLRQAQALIVACEPKPGRPFAPAESNIIVP
DVIVQKSGRGFKVLLNPDVMPKLRINDLYAQAIRGQRNGAGGLSSRLQEARWFMKNIQQR
FDTILRVSKAIVERQKGFFTHGAIAMKPLVLREIADELGLHESTISRVTTAKYMATPQGT
FELKYFFGSSLNTEAGGNASSTAVRALIQQLVSAEDASKPLSDSQLSQMLEEQGIQVARR
TVAKYREALKIAPASLRRAI
NT seq
1503 nt
NT seq
+upstream
nt +downstream
nt
atgaagccctccctccaagtccgcctgtcgcagcatctggcgctgacgccgcagctgcag
cagtcgatccggctgctgcagctgtcgacgctggagctgcaccaggaagtcgagcagatg
ctcgagcagaacccgttcctggagatggacgaggacgcggcgacaccgttcgacgcgccg
gccgaacgtgccaccgtcgaccgcgtcgccgagcgtgacgacggcgacggtgccgccgag
ccggcaccggccgaggtcgacgccgccgagttcggcaccaccgaacgcgacgactgggag
aacggcaccgagcgcgacgacttcgacggcatccgcgagaccccggccgcggccgcgccc
gaaggcgacgacgacctcgacccgcaggagcgccgcgccggcgccggcacgctgcaggac
cacctgcggcgccagatcgccggcatgcggctgtcggccgaggacgctgcggcactgcac
gtgctgatcgagtcgctggacgacgacggctacctcgccgacccgctggaggacatcgcc
gcgcgcctggccgacatgctggacctggacgacgaggagcagcgcgaggccctggccgac
cgcctgcagtgcgcgctgcgctggctgcagagcctggagccgaccggcgtcggcgcacgt
tcgctgtccgagtgcctggtgctgcaactgcgcacgacgccgcgctgcgaggcgcgcgag
gtcgcgatccgcatctgcgagcactcgctggagctgctggcgcggcgcgacgtgaagaag
ctgaccgccgccaccggcgccggcgaggacctgctgcgccaggcgcaggcactgatcgtc
gcctgcgagcccaagccggggcggccgttcgcgccggccgagtcgaacatcatcgtgccc
gacgtcatcgtccagaagtcggggcgcggcttcaaggtgctgctgaacccggacgtgatg
cccaagctgcgcatcaacgacctctacgcccaggcgatccgcggccagcgcaacggcgcc
ggcgggctgtcgtcgcggctgcaggaggcgcgctggttcatgaagaacatccagcagcgt
ttcgacaccatcctgcgtgtgtccaaggccatcgtcgagcgccagaagggtttcttcacc
cacggcgcgatcgcgatgaagccgctggtgctgcgcgagatcgccgacgagctgggcctg
cacgagagcacgatctcgcgcgtgacgacggccaagtacatggccacgccgcagggcacc
ttcgagctgaagtacttcttcggcagctcgctgaacaccgaggccggcggcaacgcgtcg
agcaccgcggtgagggcgctgatccagcagctcgtctcggccgaggacgccagcaagccg
ctgtcggacagccagctgtcgcagatgctcgaggagcagggcatccaggtcgcgcgccgc
accgtcgccaagtaccgcgaggcgctgaagatcgcgccggcctcgctgcgccgggcgatc
tga
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integrated database retrieval system
