Rubrivivax benzoatilyticus: RBXJA2T_13409
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Entry
RBXJA2T_13409 CDS
T04092
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
rbn
Rubrivivax benzoatilyticus
Pathway
rbn03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rbn00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
RBXJA2T_13409
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rbn03019
]
RBXJA2T_13409
03400 DNA repair and recombination proteins [BR:
rbn03400
]
RBXJA2T_13409
Enzymes [BR:
rbn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
RBXJA2T_13409
Messenger RNA biogenesis [BR:
rbn03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
RBXJA2T_13409
DNA repair and recombination proteins [BR:
rbn03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
RBXJA2T_13409
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RQC
HRDC
DEAD
Helicase_C
RecQ_Zn_bind
HHH
ResIII
DUF5816
Motif
Other DBs
NCBI-ProteinID:
EGJ11328
LinkDB
All DBs
AA seq
634 aa
AA seq
DB search
MSPAPVEADAAQQVLHEVFGYTAFRGRQREIVEHVAAGGDALVLMPTGGGKSLCYQVPAI
LRHRAGQGVTVVVSPLIALMHDQVGALDEVGVPAAFLNSTLDGDEARRIERELLAGRLVL
LYAAPERILTPRFLAMLESLAERDRLALFAIDEAHCVSQWGHDFREEYLGLSALHERFPQ
VPRMALTATADAHTREDIVARLKLEDARRFVSSFDRPNIRYTIVEKDEPKRQLLRFLRDE
HEGDAGIVYCQSRKKVEDTAAWLSDEGIPALPYHAGLDAETRRRHQDRFLREDGLVMVAT
IAFGMGIDKPDVRFVAHLDLPKNIEAYYQETGRAGRDGLPADAWMTYGLADVVNQRRMID
DGEADEEFKHLQRGKLDALLALAEAHDCRRVRLLGYFGERYGEGDEHAGAVPRLRCGNCD
NCLAPPATWDATEAARKALSCVYRFRQQGGQRFGAGHLVDVLRGKQTDKVAQYGHETLST
FGIGADVAETQWRGVLRQLIALGHLRTEGEFNTLELTASAREVLRGEVQLLLRVPAETPR
RGRTTRTRASADKPPPLPLDEAATARFTALKAWRGEVAREHNVPAYVVFHDATLAEMARE
RPASLDELATISGVGTKKLEAYGEEILRVLRQDA
NT seq
1905 nt
NT seq
+upstream
nt +downstream
nt
atgagtcccgcccccgtcgaggccgacgccgcgcagcaggtgctgcacgaggtgttcggc
tacaccgccttccgcggccgccagcgcgagatcgtcgagcacgtggccgccggcggcgac
gccctggtgctgatgcccaccggcggcggcaagagcctgtgctaccaggtgccggcgatc
ctgcgccaccgtgccggccagggtgtcaccgtcgtcgtctcgcctttgatcgcgctgatg
cacgaccaggtcggcgcgctcgacgaggtcggcgtgccggccgccttcctgaacagcacg
ctcgacggcgacgaggcgcggcgcatcgagcgcgagctgctcgccggccgcctggtgctg
ctgtacgccgcgcccgagcgcatcctgacgccgcgtttcctggcgatgctggagtcgctg
gccgaacgcgaccggctggcgctgttcgcgatcgacgaggcgcactgcgtcagccagtgg
ggccacgacttccgcgaggaatacctgggcctgtcggcgctgcacgagcgtttcccgcag
gtgccgcgcatggcgctgacggccaccgccgacgcccacacgcgcgaggacatcgtcgca
cggctgaagctggaggacgcgcgccgcttcgtctccagcttcgaccggccgaacatccgc
tacacgatcgtcgagaaggacgaacccaaacgccagctgctgcgtttcctgcgcgacgag
cacgagggcgacgccggcatcgtctactgccagagccgcaagaaggtcgaggacacggcc
gcctggctcagcgacgaaggcatcccggcgctgccgtatcacgccggcctggacgccgag
acgcgccgccgtcaccaggaccgcttcctgcgcgaggacggcctggtgatggtcgcgacg
atcgccttcggcatgggcatcgacaagcccgacgtgcgtttcgtcgcccacctcgacctg
ccgaagaacatcgaggcctactaccaggagaccggccgcgccggccgcgacggcctgccc
gccgacgcctggatgacctacggcctggccgacgtcgtcaaccagcgccgcatgatcgac
gacggcgaggccgacgaggagttcaagcacctgcagcgcggcaagctcgacgcgctgctg
gcgctggccgaggcgcatgactgccgccgcgtgcgcctgctcggctatttcggcgagcgt
tatggcgaaggcgacgagcacgccggcgcggtgcccaggctgcgttgcggcaactgcgac
aactgcctggcgccgccggccacctgggacgccaccgaagcggcgcgcaaggcgctgtcc
tgcgtctaccgcttccgccagcaaggcggccagcgtttcggcgccggccatctcgtcgac
gtgctgcgcggcaagcagaccgacaaggtcgcgcagtacggccacgagacactgtcgacc
ttcggcatcggcgccgacgtcgccgagacgcagtggcgcggcgtgctgcgccagctgatc
gcgctgggccatctgcgcaccgaaggcgagttcaacacgctggagctgaccgccagcgcg
cgcgaggtgctgcgcggcgaagtgcagctgctgctgcgcgtgccggccgagacgccgcgg
cgcggccgcaccacgcgcacgcgcgccagcgccgacaagccgccgccgctgccgctggac
gaggccgccaccgcacgcttcacggcgctgaaggcctggcgcggcgaggtcgcgcgcgag
cacaacgtgccggcctacgtcgtcttccacgacgccacgctggcggagatggcacgcgaa
cgcccggcttcgctcgacgaactggccacgatcagcggtgtcggcacgaagaagctcgag
gcctacggcgaggaaatcctgcgcgtgctgcgccaggacgcttga
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